EY675014

Overview
NameEY675014
Unique NameEY675014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length990
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_ARATH (Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.365e-57
Identity = 97/114 (85.09%), Postives = 105/114 (92.11%), Query Frame = 1
Query:   37 NRFFDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            NR+FDFEKLA+VTA VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGM F+SPEAQQLNKDIFETIYYHALK S+E+AA+ GPYETY  SPVSKGILQPDMW
Sbjct:  477 NRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMW 590          

HSP 2 Score: 36.1946 bits (82), Expect = 8.365e-57
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  414 VLRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITSKQSK 557
            VLRDMISKNGVRNSLL    A +P  +      N   FEP+ ++  S+
Sbjct:  602 VLRDMISKNGVRNSLL---VAPMPTASTSQILGNNECFEPYTSNIYSR 646          

HSP 3 Score: 25.0238 bits (53), Expect = 8.365e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  368 PTCGNVIPSDRRDW 409
            P   NVIPSDR DW
Sbjct:  587 PDMWNVIPSDRWDW 600          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_MOUSE (Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.264e-40
Identity = 82/119 (68.91%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   22 EHTF*NRFFDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            EHT+     DFEKLA+VT ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FIL+   FESPEAQ LNK IFETIYY AL+ S E+A + GPYETY  SPVSKGILQ DMW
Sbjct:  458 EHTY-----DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMW 571          

HSP 2 Score: 23.0978 bits (48), Expect = 1.264e-40
Identity = 14/43 (32.56%), Postives = 23/43 (53.49%), Query Frame = 3
Query:  417 LRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITS 545
            L++ I+K G+RNSLL    A +P  +      N    EP+ ++
Sbjct:  584 LKEKIAKYGIRNSLL---IAPMPTASTAQILGNNESIEPYTSN 623          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_HUMAN (Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.049e-39
Identity = 81/119 (68.07%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   22 EHTF*NRFFDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            EHT+     DF+KLA+VT +V  NLNKIID+NYYPV  A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LNK IFETIYY AL+ S ++A ++GPYETY  SPVSKGILQ DMW
Sbjct:  458 EHTY-----DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMW 571          

HSP 2 Score: 24.6386 bits (52), Expect = 1.049e-39
Identity = 15/44 (34.09%), Postives = 24/44 (54.55%), Query Frame = 3
Query:  414 VLRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITS 545
            VL++ I+K G+RNSLL    A +P  +      N    EP+ ++
Sbjct:  583 VLKEKIAKYGIRNSLL---IAPMPTASTAQILGNNESIEPYTSN 623          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_DROME (Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.320e-39
Identity = 75/111 (67.57%), Postives = 89/111 (80.18%), Query Frame = 1
Query:   46 FDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            +DF+KL +VT IVT+NLNKIID+NYYP+  AR+SNLRHRP+GIG+QG AD  IL+   +ES EA  LN+ IFETIYY AL+ S E+A  EGPYETY  SPVSKGILQ DMW
Sbjct:  472 YDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMW 582          

HSP 2 Score: 25.7942 bits (55), Expect = 2.320e-39
Identity = 16/43 (37.21%), Postives = 23/43 (53.49%), Query Frame = 3
Query:  417 LRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITS 545
            L++ I  +GVRNSLL    A +P  +      N   FEP+ T+
Sbjct:  595 LKESIRMHGVRNSLL---VAPMPTASTAQIMGNNESFEPYTTN 634          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_PONAB (Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.321e-39
Identity = 81/119 (68.07%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   22 EHTF*NRFFDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            EHT+     DF+KLA+VT +V  NLNKIID+NYYPV  A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LNK IFETIYY AL+ S ++A ++GPYETY  SPVSKGILQ DMW
Sbjct:  458 EHTY-----DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMW 571          

HSP 2 Score: 23.483 bits (49), Expect = 2.321e-39
Identity = 14/44 (31.82%), Postives = 24/44 (54.55%), Query Frame = 3
Query:  414 VLRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITS 545
            +L++ I+K G+RNSLL    A +P  +      N    EP+ ++
Sbjct:  583 LLKEKIAKYGIRNSLL---IAPMPTASTAQILGNNESIEPYTSN 623          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_DANRE (Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.024e-39
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1
Query:   40 RFFDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWK 381
            R FDF+KLA VT ++ +NLNKIID+NYYPV+ A  SN RHRPIGIGVQGLAD FIL+   FES EAQ LN  IFETIYY AL++S E+AA+ GPY+TY   PVSKGILQ DMW+
Sbjct:  459 RTFDFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWE 572          

HSP 2 Score: 22.7126 bits (47), Expect = 3.024e-39
Identity = 14/43 (32.56%), Postives = 23/43 (53.49%), Query Frame = 3
Query:  417 LRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITS 545
            L++ I+ +GVRNSLL    A +P  +      N    EP+ ++
Sbjct:  584 LKEKIANDGVRNSLL---LAPMPTASTAQILGNNESIEPYTSN 623          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_CAEEL (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.133e-39
Identity = 77/111 (69.37%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   46 FDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            FDF KLA+VT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+   F S EA+ LNK IFETIYY AL+ S E+A   GPY TY  SPVSKG LQ DMW
Sbjct:  467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMW 577          

HSP 2 Score: 25.409 bits (54), Expect = 5.133e-39
Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 3
Query:  417 LRDMISKNGVRNSLLGNTNAHLPRPALILRENNGVPFEPHITSKQSK 557
            LR  I+K+G+RNSLL    A +P  +      N    EP+ ++  S+
Sbjct:  590 LRKKIAKHGIRNSLL---MAPMPTASTAQILGNNESIEPYTSNIYSR 633          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_CRYPV (Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium parvum GN=RNR1 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.258e-38
Identity = 71/114 (62.28%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   37 NRFFDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMW 378
            N+ FDF+KL +VT ++T NLNK+IDV YY ++  ++SNLRHRP+GIG+QGLAD F++L M +ES  A++LNK IFE IYY AL  S E+A K GPYETY  SP SKGILQ DMW
Sbjct:  457 NKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMW 570          

HSP 2 Score: 26.9498 bits (58), Expect = 4.258e-38
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 3
Query:  414 VLRDMISKNGVRNSLL 461
            +L+D ISK+G+RNSLL
Sbjct:  583 LLKDRISKHGIRNSLL 598          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_VARV (Ribonucleoside-diphosphate reductase large subunit OS=Variola virus GN=I4L PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.943e-36
Identity = 85/157 (54.14%), Postives = 96/157 (61.15%), Query Frame = 1
Query:   46 FDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWKC------------NSIRSKGLGEYLEI*YPRME*EIHFLVTPMPT 480
            FDF KL DV  ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY  S  S GILQ D+W              + IR+ GL   L             LV PMPT
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSL-------------LVAPMPT 603          
BLAST of EY675014 vs. ExPASy Swiss-Prot
Match: RIR1_VACCW (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Western Reserve) GN=VACWR073 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.943e-36
Identity = 85/157 (54.14%), Postives = 96/157 (61.15%), Query Frame = 1
Query:   46 FDFEKLADVTAIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMAFESPEAQQLNKDIFETIYYHALKTSSEIAAKEGPYETYHNSPVSKGILQPDMWKC------------NSIRSKGLGEYLEI*YPRME*EIHFLVTPMPT 480
            FDF KL DV  ++  NLNKIID+NYYP+  A  SN RHRPIGIGVQGLAD FILL   F+S EAQ LNK IFETIYY AL+ S E+A KEGPY+TY  S  S GILQ D+W              + IR+ GL   L             LV PMPT
Sbjct:  460 FDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSL-------------LVAPMPT 603          
The following BLAST results are available for this feature:
BLAST of EY675014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RIR1_ARATH8.365e-5785.09Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_MOUSE1.264e-4068.91Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_HUMAN1.049e-3968.07Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DROME2.320e-3967.57Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_PONAB2.321e-3968.07Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DANRE3.024e-3968.42Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_CAEEL5.133e-3969.37Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_CRYPV4.258e-3862.28Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_VARV5.943e-3654.14Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_VACCW5.943e-3654.14Ribonucleoside-diphosphate reductase large subunit... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-G11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY675014 ID=EY675014; Name=EY675014; organism=Citrus sinensis; type=EST; length=990bp
CCCGCGTCCGAGGATTGTTGGGAGCACACGTTCTAAAATAGATTTTTTGA
CTTTGAAAAATTAGCTGACGTTACTGCAATTGTTACTGAAAACCTTAACA
AAATAATTGATGTTAATTACTACCCTGTTGAAACTGCCAGAAGGTCAAAT
TTGCGACATAGACCCATCGGTATTGGAGTTCAGGGTCTAGCAGATACCTT
CATCTTACTTGGAATGGCATTTGAATCACCAGAGGCTCAACAGCTGAACA
AAGACATATTTGAAACCATTTACTACCATGCTCTGAAAACTTCTTCGGAG
ATAGCTGCAAAAGAAGGTCCTTATGAAACATATCATAATAGCCCTGTGAG
CAAGGGAATTCTCCAACCCGACATGTGGAAATGTAATTCCATCAGATCGA
AGGGACTGGGGGAGTACTTAGAGATATGATATCCAAGAATGGAGTGAGAA
ATTCACTTCTTGGTAACACCAATGCCCACTTGCCTCGACCAGCCCTAATT
CTCCGGGAAAACAATGGAGTGCCTTTTGAACCCCATATAACTTCCAAACA
ATCTAAAGTCCCCAAAATTTCTAAAAGGTGGAATTTTGTTGTTAAGGTAA
ATAACCCTCCTTCCCTTCACGAACTTTAACCTGAAAATGGGGGAATTGAT
GTCCCCCCCAACATATTAAAAAAAAAAAAAAAATAATACCGAAAAAAGGG
GGTTCGTTTCCAAAAGAAATCCCAAAAAAAATCCCTGAGAGGAGAATATA
AATACATTTATAAAAGCATGAAATGGTTTTAGGAGAAAAAACACTAAGAC
AAAAATAAACCACACTGGAAATAAAAAACATGAGCTGCGTATTATAGAAT
AAGGGAGGTGTACAAAAATCATATAGAAAAACCTAGAACCGTACAAAAAA
TCACATTATAAAAACAAATTGATGCTACAAAGGGATAATTAATACAAAAA
TTCAAAATAGTACTTTAATTTGTAAGTATAAAGATGAACA
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