EY674993

Overview
NameEY674993
Unique NameEY674993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8515 contig Csv1_Contig8515:1..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY674993 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 2.663e-83
Identity = 140/158 (88.61%), Postives = 152/158 (96.20%), Query Frame = 2
Query:   29 VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCT 502
            VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVF CFGQYFCLHFEA+QLG APVYMAFLRFMGDE +AR+Y+YSLEVGG+GRK +WEGTPRS+RD HRKVRDSHDGLIIQRNMALFFSGGD+KELKLRVTGRIWKEQQNPD+GVCI ++C+
Sbjct:  151 VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDSGVCITSMCS 308          
BLAST of EY674993 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.255e-81
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 2
Query:   29 VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ--NPDAGVCIPNL 496
            VAHLRDDHKVDMH+GCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEA+QLG APVYMAFLRFMGDETEAR+Y+YSLEVGG GRKL WEGTPRS+RD HRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQ      G CIPNL
Sbjct:  168 VAHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQSGEGGGACIPNL 325          
BLAST of EY674993 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.237e-80
Identity = 139/156 (89.10%), Postives = 148/156 (94.87%), Query Frame = 2
Query:   29 VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNL 496
            VAHLRDDHKVDMH G TFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEA+QLG  PVYMAFLRFMGDE +ARSYSYSLEVGG+GRKL+WEGTPRSIRD HRKVRDS+DGLIIQRNMALFFSGGDRKELKLRVTG+IWKEQ +PD+G+ IPNL
Sbjct:  169 VAHLRDDHKVDMHAGSTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQHSPDSGLSIPNL 324          
BLAST of EY674993 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.522e-70
Identity = 121/151 (80.13%), Postives = 135/151 (89.40%), Query Frame = 2
Query:    8 SGTSHTCVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 460
            +G   T V HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEA+QLG APVYMAFLRFMGDE EA+ +SYSLEVG +GRKL+W+G PRSIRD HRKVRDS DGLII RN+AL+FSGGDR+ELKLRVTGRIWKE+
Sbjct:  158 TGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308          
BLAST of EY674993 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 7.041e-68
Identity = 118/151 (78.15%), Postives = 133/151 (88.08%), Query Frame = 2
Query:    8 SGTSHTCVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAYQLGTAPVYMAFLRFMGDETEARSYSYSLEVGGNGRKLSWEGTPRSIRDCHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 460
            +G   T V HL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEA+QLG APVYMAFLRFMGDE EA+ +SYSLEVG + RKL+W+G PRSIRD HRKVRDS DGLII RN+AL+FSG D++ELKLRVTGRIWKE+
Sbjct:  155 TGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305          
The following BLAST results are available for this feature:
BLAST of EY674993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SINA5_ARATH2.663e-8388.61E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA3_ARATH3.255e-8189.87E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA4_ARATH1.237e-8089.10E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA2_ARATH7.522e-7080.13E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA1_ARATH7.041e-6878.15Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-004-E03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674993 ID=EY674993; Name=EY674993; organism=Citrus sinensis; type=EST; length=938bp
CCACGCGTCCGGGACATCCCATACTTGCGTTGCCCATTTGAGGGACGATC
ACAAAGTAGATATGCACACAGGATGCACATTCAATCATCGCTATGTGAAG
TCCAATCCCCGTGAAGTAGAGAATGCTACTTGGATGCTTACAGTTTTCCA
TTGTTTTGGTCAATACTTCTGCCTTCATTTCGAAGCATACCAGCTTGGGA
CAGCTCCTGTTTACATGGCATTCCTCCGTTTTATGGGTGATGAGACTGAG
GCTCGAAGCTATAGCTATAGCCTAGAGGTTGGGGGAAATGGCAGGAAGCT
CAGTTGGGAGGGAACACCCCGAAGCATCCGGGATTGCCACCGGAAGGTCA
GGGATAGCCATGATGGTCTTATCATCCAACGAAACATGGCGCTTTTCTTC
TCTGGTGGGGACAGGAAGGAGCTGAAGCTAAGAGTTACTGGGAGGATATG
GAAGGAACAACAGAATCCAGATGCTGGCGTGTGCATACCAAACCTATGTA
CCTGAAAGGTGATTTTTGGATCAAATTCTTTTTTTTTGTGATTTGTTTGG
AAACTTTTTTTTCTGGTGGGTTGAACCGGTGTCAAGTTTTTCGGGGGCCT
TTGTACCGGAAATTGAAAAATGGGCTTTTTTATCCTTCAGTAAATTTTAA
CCACCTTTTTTTTTCCCCGATCCAATACGGATACTCGGAGTCCTTAGAGA
GTAATTAAAATAAGAAGGGGGGGGGCCGCCCTTAAAGGAATTCCAGGGCT
TTAGGTTCCCGGTGGGGGGGGAAGTCTCATCTCTTTTTAATATGGGTCCC
ATAAATTTTTTATTTTCTGTGGCCCCTTTTTTTTTACAAGCGTTGATGAA
AGGGGAAAAAAACCCTGCGTTTTTCACACCCAATTATGTGGCCCGTGTAG
CCCCACCATACCCCCACCTTTTCCACCCGACAGGGGGG
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