EY674964

Overview
NameEY674964
Unique NameEY674964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13487 contig Csv1_Contig13487:364..1382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 8.826e-51
Identity = 98/128 (76.56%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FTRNI QGKPIT+YRGKN VDLARDFTYIDDIVKGCLGSLD            RG APYRIFNLGNTSPVTVP LV+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+NEFGY+PTT     L+K
Sbjct:  283 FTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKK 410          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.726e-38
Identity = 79/128 (61.72%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FTR+I +GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD            RG A  R+FNLGNTSPV V  LV+ILER LKVKAK+N++++P NGDVPFTHANISSAQ EFGY+P+T     L+K
Sbjct:  287 FTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKK 414          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 5.023e-38
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FT++I +GK I+++   NH  +ARDFTYIDDIVKGCL +LD            RGPA  R+FNLGNTSPV V  LV ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ E GY+PTT     L+K
Sbjct:  292 FTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 419          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.493e-37
Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FTR+I +GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD            RG A  R+FNLGNTSPV V  LV ILER LKVKAK+N++++P NGDV FTHANISSAQ E GY+PTT     L+K
Sbjct:  286 FTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKK 413          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.280e-33
Identity = 71/128 (55.47%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FT++I  GK I +YR +++ ++ARDFTYIDDIVKGC+G+LD            RG A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDVP+THAN+S A  +FGY+PTT  A  L K
Sbjct:  307 FTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRK 434          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.725e-33
Identity = 71/128 (55.47%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FT++I +GK ITV+   +   +ARDFTYIDDIVKGCLG+LD            +GPA +RI+NLGNTSPV V KLV ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P       L+K
Sbjct:  291 FTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKK 418          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.873e-14
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEKIC 390
            F +NI  GK I VY   N+ ++ RDFTYI D+V G L ++             +    Y IFNLGN+ PV +   + ++E++L  KAKK  + M  +GDV  T+A++S ++   GY+P       L++ C
Sbjct:  201 FAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFC 313          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.584e-13
Identity = 44/125 (35.20%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGP-----APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTT 360
            FT+ + +GK I VY   N+  + RDFTYIDDI +  +   D             G      APYR++N+GN+SPV +   +  LE  L ++AKKN++ +   GDV  T A+  +     G+ P T
Sbjct:  195 FTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-PGDVLETSADTKALYEVIGFTPET 315          

HSP 2 Score: 26.1794 bits (56), Expect = 3.584e-13
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 2
Query:  344 GTGPRRDLQTGLKKFVRWYLSYY 412
            G  P   ++ G+K FV WY  +Y
Sbjct:  310 GFTPETTVKDGVKNFVNWYRDFY 332          
BLAST of EY674964 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.183e-12
Identity = 44/134 (32.84%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 FTRNIPQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXXRGP------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQNEFGYRPTTGFANRLEK 384
            FT+ I   + I VY   NH ++ RDFTY+DDIV+  +  L               P      APY+++N+GN SPV + + V  +E  L  +A+KN +++   GDVP T+AN+     +  ++P T   + + K
Sbjct:  195 FTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVEA-ISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQ-PGDVPETYANVDDLFRDIDFKPETTIQDGVNK 323          
The following BLAST results are available for this feature:
BLAST of EY674964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GAE1_ARATH8.826e-5176.56UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE2_ARATH1.726e-3861.72UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE4_ARATH5.023e-3861.72UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH2.493e-3760.94UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE6_ARATH1.280e-3355.47UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE5_ARATH3.725e-3355.47UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
Y1055_METJA3.873e-1435.38Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
YCL2_ECO113.584e-1335.20Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
CAPI_STAAU6.183e-1232.84Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-H12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674964 ID=EY674964; Name=EY674964; organism=Citrus sinensis; type=EST; length=1019bp
TTCACGAGAAATATTCCCCAAGGCAAACCAATCACGGTTTATCGTGGGAA
GAATCACGTCGACTTGGCACGAGATTTTACTTACATTGACGATATCGTGA
AGGGTTGTTTAGGTTCGCTGGATACCTCGGGTAAGAGTACCGGGTCGGGC
GGAAAGAAGCGGGGCCCAGCACCGTACCGGATCTTTAATTTGGGGAACAC
GTCACCGGTCACGGTACCTAAGCTGGTGAATATATTGGAGAGACACCTGA
AGGTAAAAGCCAAGAAGAATGTAATCGAAATGCCTGGAAACGGCGACGTC
CCGTTCACGCATGCGAATATCAGTTCGGCCCAGAATGAGTTCGGGTACAG
GCCCACGACGGGATTTGCAAACCGGCTTGAAAAAATTTGTTAGATGGTAT
CTCTCATATTACGGCTATAATCGTGGGCAACGTGTAAATTAATTTTTTTT
TCCTTTTATGTTTTTTTGCGTTTTTACCTTCCTTTTTTTCCTTTTTTTTT
TTTGGGTTTCCCCGCCGTGGGAGGGGCGGGATTAGAGGGGTTTTTTTTTT
TTTGGTTTTTTTCCCTTAAAAAAAACAAAAGGGACCAAAAAACGTTTGTA
AGGTGAAAAAAGAAAAAAAGAAAAAAAAAGGGGCCCCATTTTTTTCTTTT
TTTTTGGGGGGATGGGAAAAAAGGGGGTTTCCCCTTCCCCCCCCCCGGCA
TTTTCCTTTTGGTTTTTGTTTTTCCTCCACTTTTGGTTCCCCATTTCCTT
TGGGGGGGAGGAAAAAGGGAAAAAAAAAAAAACCTTCCAATTTTTTATTT
GTTCGGGAAAAAAAAAAAAAAAAAAGGGGGGGGCCCCCTTCCTAAAAGAG
ATACAAGTTTTCTATCTTTTCCCCACCTGGGTAAGCGAAACCTCCCTATA
GTTCTTTTTTTTAAATATGTGTTCCCTCCCTAATAATAATTCCTTTCTTC
CCTGGGGGGGCGCGCGTGTTGTTGTTTTTTTTTATTCGCTCTCACCCCTC
GATGGTCGATGGGGGAGGG
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