EY674960 | Citrus Genome Database

Overview


Name	EY674960
Unique Name	EY674960
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1041

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadI PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.397e-29
Identity = 68/130 (52.31%), Postives = 93/130 (71.54%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDDLI-----SPYRG-LARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGLSMG+  E+MAK   I R  QDELT+ SHQ+  AA++ G+  D +      PY+  L+RDNN+R D+ +EKLA L P +DR++G++TA NSTPLTDGAS V++ +E+ A E GLPVL YLR+
Sbjct:  174 AVAEYSTGLSMGQTAEQMAKTHNISREDQDELTVRSHQKAHAAWEAGWLSDEVMTAYPEPYKKHLSRDNNIRGDSQIEKLAKLKPVFDRKHGSVTAANSTPLTDGASAVMMMTESRAKELGLPVLGYLRS 303

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.375e-27
Identity = 61/130 (46.92%), Postives = 85/130 (65.38%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPY-RGLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QDEL   SH+    A++ G   D      + PY + L+ DNN+R D++LE+ + L PA+DR++GT+TA NSTPLTDGA+ VL+ SE+ A   GL  L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGITREEQDELAHRSHKLAAQAWESGVLRDEVMTAYVPPYEKALSEDNNVRHDSALEQYSRLRPAFDRRHGTVTAANSTPLTDGAAAVLMMSESRAKSLGLTPLGYLRS 303

HSP 2 Score: 33.4982 bits (75), Expect = 9.375e-27
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+  N+A+  G KLK L G+RP    K LLP
Sbjct:  137 SKALARTLVDMNKARTLGQKLKLLSGLRP----KDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPY (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPB (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

BLAST of EY674960 vs. ExPASy Swiss-Prot
Match: FADI_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadI PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.588e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = -2

Query:   24 AMAKPRTGLSMGEHCEEMAKRWQIKRLAQDELTLTSHQRLDAAYKQGFFDD-----LISPYR-GLARDNNLRADTSLEKLAGLSPAYDRQNGTLTAGNSTPLTDGASVVLLASEAWAAERGLPVLAYLRT 395
            A+A+  TGL MG+  E+MAK + I R  QD L L SHQ    A++QG+  D      I PYR  +  DNN+R D++L + A L PA+DRQ+G++TA NSTPLTDGA+ VL+ SE+ A   GLP L YLR+
Sbjct:  174 AVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRSHQLAAEAWQQGWLHDEVMTAYIPPYREAIIEDNNIRKDSTLAQYAKLRPAFDRQHGSVTAANSTPLTDGAAAVLMMSESKAKALGLPPLGYLRS 303

HSP 2 Score: 25.409 bits (54), Expect = 1.588e-26
Identity = 14/38 (36.84%), Postives = 22/38 (57.89%), Query Frame = -1

Query:  397 NESLRRTLLSANRAKGTGAKLKALMGVRPSMFFKPLLP 510
            +++L RTL+ AN+A+    KLK    +R     + LLP
Sbjct:  137 SKALARTLVDANKARSLSQKLKLFSRLR----LRDLLP 170

The following BLAST results are available for this feature:

BLAST of EY674960 vs. ExPASy Swiss-Prot

BLAST of EY674960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207


Match Name	E-value	Identity	Description
FADI_IDILO	4.397e-29	52.31	3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G...	[more]
FADI_PECCP	9.375e-27	46.92	3-ketoacyl-CoA thiolase OS=Pectobacterium carotovo...	[more]
FADI_YERPY	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul...	[more]
FADI_YERPS	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul...	[more]
FADI_YERPP	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain...	[more]
FADI_YERPN	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant...	[more]
FADI_YERPE	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadI...	[more]
FADI_YERPB	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul...	[more]
FADI_YERPA	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant...	[more]
FADI_YERP3	1.588e-26	50.00	3-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-401-003-H04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY674960 ID=EY674960; Name=EY674960; organism=Citrus sinensis; type=EST; length=1041bp
AATTCACCGCTTGCGGTTTCACCGGTCCGCAAATAAGCCAAAACCGGCAA
GCCACGTTCGGCAGCCCATGCCTCGCTGGCCAGCAGCACCACCGAGGCGC
CATCGGTCAGGGGCGTGGAGTTGCCGGCGGTGAGCGTGCCGTTCTGGCGG
TCGTAGGCCGGGGACAGGCCGGCGAGTTTCTCCAGGCTGGTGTCGGCCCG
CAGGTTGTTGTCCCGGGCCAGGCCGCGATACGGGCTGATCAAATCATCGA
AGAAACCCTGCTTGTAGGCCGCGTCCAACCGTTGGTGGCTGGTGAGGGTC
AGTTCGTCCTGGGCCAGGCGCTTGATCTGCCAACGCTTGGCCATTTCTTC
ACAGTGTTCACCCATGGACAGGCCAGTACGCGGTTTCGCCATTGCGCGGC
AGCAGCGGCTTGAAGAACATCGACGGACGCACGCCCATCAAGGCCTTCAA
CTTGGCGCCGGTGCCCTTGGCGCGGTTGGCTGAAAGCAACGTGCGGCGCA
AGGACTCGTTGAAGCCCAAGGGGCCCGTCCGAGGTGGTGGTCGGAAACCG
CCCGGAATGCCCCCCTTTCATCTGCCCCAAGGCCATCTTGTTTCGCCCCC
AGCCACCCCGCCTTTCCCGGCCCGTGGCCGCAAGGTTTGTTTGCAGTCCT
AGGGCCGGGGGGTTTCGGGGAAAAAGCGGGGGGGGAAACCAGGCTTCCCC
CCCGGGGCCAGTTTGAATTCCCCCGGGAAATGTTTGTTCTCCCACCCCGG
GGGGAAAAATCCCCCCAGAGCCCAAGGCTCGGTGAAGGGGTGGAAGAGAG
ACCCACCCGGACCTTGGTAAGGGGTGCAAAACGAAAAAAAAACCAAGGTT
ATGAGTCCAGGAGGGCAAAAAAACAATCTATTAAGGGGGAAGGGCGAAAA
TATGGAAGGGAGGGGTACTCCTATGCCGAAATTATATCCAACCCTTATAA
GGGTGAGTTGGAAGATAGTGACCAACGGGGATGGAGAAAAACTAGATTTT
TTTTCCCGACTCTTTTCTGTATCCTTTGGTGAATTCGACTT