EY674947

Overview
NameEY674947
Unique NameEY674947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674947 vs. ExPASy Swiss-Prot
Match: YEAM_ECOLI (Uncharacterized HTH-type transcriptional regulator yeaM OS=Escherichia coli (strain K12) GN=yeaM PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.601e-15
Identity = 50/156 (32.05%), Postives = 74/156 (47.44%), Query Frame = 1 
Query:   19 LPHHTCVIATSALLLEAVRRAATWAEPQ-LEPPQARIAQVILDEIAGLPQEPFGLPLPQDPRLLRIAQALADDPSDNRLLEQWAQWASVSPRTLARRFVAETGFTFSQWXXXXXXXXXXXXXXXHVPVTRVALDLGYENVSAFIAMFRRTFGDDAG 483
            +P   C +  S L  E +   A     Q  EP   R+ QV+ DE+   PQ+   LP+   P++  + + +A  P +   L QWA + ++S R LAR  V ETG +F QW                  V +VA  LGY++ +AFI MF++  G   G
Sbjct:   98 MPTTCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKIRTMVEMMAKGPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPG 253
The following BLAST results are available for this feature:
BLAST of EY674947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YEAM_ECOLI1.601e-1532.05Uncharacterized HTH-type transcriptional regulator... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-F02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674947 ID=EY674947; Name=EY674947; organism=Citrus sinensis; type=EST; length=1029bp
CCTCAGGCGTGTGCCGGTCTGCCGCACCATACGTGTGTTATCGCCACGTC
GGCCTTGTTACTGGAGGCTGTCAGGCGCGCGGCAACCTGGGCCGAGCCGC
AGCTGGAGCCGCCACAGGCGCGAATTGCCCAGGTGATCCTTGATGAAATC
GCCGGCTTGCCCCAGGAACCATTTGGCTTGCCGCTGCCCCAGGACCCGCG
GCTGTTGCGCATCGCCCAGGCGCTGGCTGACGACCCGAGCGACAACCGCC
TGCTGGAGCAATGGGCACAGTGGGCCAGCGTATCCCCGCGTACGCTGGCC
CGGCGGTTTGTCGCCGAGACCGGGTTCACCTTCAGCCAATGGCGTCAGCG
TGCGCGGTTGTTGCGCGCCTTGGAGTTACTGGCGGCGCACGTACCGGTCA
CCCGGGTTGCGCTGGACCTGGGTTATGAAAACGTCAGTGCCTTTATTGCC
ATGTTCCGGCGCACGTTTGGGGACGACGCCGGGGCGGTACTTCATGGATG
GCGCAACCGACTACGGGCATACACCGCCCCAATCACGAAACAGCCCATAG
GCAACAAATAAGCCAGCGCCCACCGTGCTGGTTACCCCCACCTTGCCCCT
CAGGTAACGGATCAACCCCCCCCCCGACAAATCGCCCAGGATCCTGGAAA
CAAACGGCCCGCGCTTGGGTGGGGGGCCCCGAGGGTTTTTCCGCCCCAGG
GGAAAAAAGCGTCCGGGAAAATGGATTTGGAAATGGAAAAAAAAAAACTG
CGAAACACACGGCAATTACCCGAAAAGGGCTTTCCGGGGCAATCCCCCCC
CCCGCGCCCCACAAACGGGAAAATTTGAGTCTCCGCCGAAAAAATTCGCC
ACGACGCTTTTTGGGCCCCGCGGAACCCTCCCCCCACCCACCCCGGGTGG
GTGGGAAAAAAAAAGCCCCCAGAACAACCGAAAAAACCCGCCCCCTCCCC
CCCCCATAAATCTGAACCACTGAAGGGATGGGGGGGACGGGGCTGGGGGT
GTGTGGGGGGGACGCCCCCCCACCCTTTT
back to top