EY674934

Overview
NameEY674934
Unique NameEY674934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1015
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674934 vs. ExPASy Swiss-Prot
Match: FBPB_ACTPL (Ferric transport system permease protein fbpB OS=Actinobacillus pleuropneumoniae GN=fbpB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.589e-14
Identity = 61/187 (32.62%), Postives = 92/187 (49.20%), Query Frame = -2
Query:   37 GGWWPYRNSITMALCTALIGSVLIFTGAYLMEKT--KGQKGLNLALRMLSFVPMAVPGLVLGLGYVFFFNLNGNPLHVLYGTMTLLVVCTIAHYLXXXXXXXXXALRQLDAEFEAAALSLKAPLYRHYLRVTVPICLPALLDIVRYLFVSAMTTVSAAIFLYSPDTILAAVAVLNMDDAGNVGGAAA 591
            G W    N++  A   A + ++     AY++ +   +G+K L   L ML F   AVPG V G+ Y+  FN    P+++  GT  ++++  +   L          L QLD   + A+LSLK    +    +  P+  PALL  +   FV AMTTVSA +FL + DT +A   +LN  + G  G A A
Sbjct:  474 GAWPSLINTMIYAGIAAPLTALFGLLIAYIVVRKDFQGKKTLEF-LTMLCF---AVPGTVAGVSYILAFN--DAPMYIT-GTGIIIIISMVMRDLPIGMRAAIAGLGQLDKSLDEASLSLKGSSLKTIWFIVFPLLKPALLSALVTSFVRAMTTVSAIVFLVTADTRVATAYILNRVEDGEYGVAIA 653          
BLAST of EY674934 vs. ExPASy Swiss-Prot
Match: FBPB1_HAEIN (Putative ferric transport system permease protein fbpB 1 OS=Haemophilus influenzae GN=fbpB1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 56/166 (33.73%), Postives = 83/166 (50.00%), Query Frame = -2
Query:  100 GGWWPYRNSITMALCTALIGSVLIFTGAYLMEKT--KGQKGLNLALRMLSFVPMAVPGLVLGLGYVFFFNLNGNPLHVLYGTMTLLVVCTIAHYLXXXXXXXXXALRQLDAEFEAAALSLKAPLYRHYLRVTVPICLPALLDIVRYLFVSAMTTVSAAIFLYSPDT 591
            G W    N++  A   A + +      AY++ +   +G+K L   L ML F   AVPG V G+ Y+  FN    PL++  GT  ++++  +   L          L QLD   + A+LSLK   ++    + +P+  PALL  +   FV AMTTVSA IFL + DT
Sbjct:  426 GAWPSLINTLIYAGIAAPLTAFFGLLIAYIVVRKDFQGKKSLEF-LTMLCF---AVPGTVAGVSYILAFN--NAPLYIT-GTGIIVIISMVMRDLPIGMRAAIAGLGQLDKSLDEASLSLKGSSWKTLCFIVLPLLKPALLSALVTSFVRAMTTVSAIIFLVTADT 584          
The following BLAST results are available for this feature:
BLAST of EY674934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBPB_ACTPL8.589e-1432.62Ferric transport system permease protein fbpB OS=A... [more]
FBPB1_HAEIN3.609e-1233.73Putative ferric transport system permease protein ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-D07-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674934 ID=EY674934; Name=EY674934; organism=Citrus sinensis; type=EST; length=1015bp
CGGGCCGGGTCCGGTCCCGGATTCCCGGGTCGACATCGCCGCCGCGCCGC
CGACGTTGCCCGCGTCGTCCATGTTCAGCACGGCGACTGCCGCGAGGATG
GTGTCGGGGCTGTAGAGGAAGATCGCGGCGGAGACGGTGGTCATCGCCGA
GACGAACAGGTAGCGCACGATGTCCAGCAACGCCGGCAGGCAGATCGGCA
CGGTGACCCGCAGGTAATGCCGGTACAGCGGCGCCTTGAGGGACAATGCG
GCGGCTTCGAACTCGGCGTCCAACTGACGCAGGGCCGTGGTGGCGGTCAT
TTGTGCGGTGGTCAAATAGTGAGCAATGGTGCACACCACCAGCAGCGTCA
TGGTGCCGTAGAGCACATGCAGCGGGTTGCCGTTGAGGTTGAAAAAGAAC
ACGTAGCCCAGGCCCAGCACCAACCCTGGCACCGCCATCGGCACGAAGCT
GAGCATGCGCAGCGCTAGGTTCAGGCCCTTCTGGCCCTTGGTCTTTTCCA
TCAGGTAGGCGCCGGTAAAGATCAGCACGCTGCCGATCAACGCGGTGCAC
AGGGCCATGGTGATGCTGTTGCGGTAGGGCCACCAACCGCCCGCCGGCGT
GGCCTCCAACTGGGTAGTGGGCCAGGGACAGCGACAGGTTTGTAGGGCCA
GAACTTCACCAGCGACGAAGTAGACCGCCATGCCCAACACCCGGCAACCG
GGATCCCGCAAATCAGCTGGGCCAAGGGCCAAAAACCACCCTTCCCCCCT
TTTCCAACGGGCCCGGCGGGGAACCTTTGGGCGCGGGCCCGCCTAAAGGG
AATCCAGGCTATAAGTACGCCGGTGCGTGGCAACGTCCAAAGCCTCTTTT
TTAAAGTGGGCCCCCTAAATTTTCCATTTCTCTGGGGGCCGGTCTGTTTT
TTTAAAAGGTCGCGGGACTGGGGGGAAAAAACCCCCGGGGGGGTTTTACC
CCCTATTTTTATATCCCCCCCTTTTTGGCCACTCACTCCACTCCCCCCTT
TTTTTTCCCCTCCCA
back to top