EY674930

Overview
NameEY674930
Unique NameEY674930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1062
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8513 contig Csv1_Contig8513:1..1062. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: GMHB_PSEAE (D,D-heptose 1,7-bisphosphate phosphatase OS=Pseudomonas aeruginosa GN=gmhB PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.561e-21
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = -3
Query:   32 LIILDRDGVINQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVVATNQSGLARGLLDMDTLTAIHTKIRGELAAAGGSV 274
            L+ILDRDGVIN DSD ++K+ DEWI +P S++AIARL+QA WTV VATNQSG+ARG  D+  L A+H ++R  +A  GG V
Sbjct:    5 LLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEV 85          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: GMHB_NEIMB (D,D-heptose 1,7-bisphosphate phosphatase OS=Neisseria meningitidis serogroup B GN=gmhB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.256e-19
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = -3
Query:   29 VKLIILDRDGVINQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVVATNQSGLARGLLDMDTLTAIHTKIRGELAAAGGSVD 280
            +KLIILDRDGVINQD D FVKS DEWI + GS+ A+A LTQA +TV VATNQSG+ R    +  LT +H K+   +  AGG ++
Sbjct:    1 MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEIN 84          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: GMHB_NEIMA (D,D-heptose 1,7-bisphosphate phosphatase OS=Neisseria meningitidis serogroup A GN=gmhB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.256e-19
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = -3
Query:   29 VKLIILDRDGVINQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVVATNQSGLARGLLDMDTLTAIHTKIRGELAAAGGSVD 280
            +KLIILDRDGVINQD D FVKS DEWI + GS+ A+A LTQA +TV VATNQSG+ R    +  LT +H K+   +  AGG ++
Sbjct:    1 MKLIILDRDGVINQDRDDFVKSVDEWIPVEGSMDAVAFLTQAGYTVAVATNQSGIGRKYFTVQNLTEMHAKMHRLVRQAGGEIN 84          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_DELAS (Glycyl-tRNA synthetase beta subunit OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=glyS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.166e-18
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  283 AAIAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 504
            AA+ ++ P+A+ Q AAGD+ A+L+TLA  R PVDAFF  +MV AEDPA++ANRL LL  LH  MN+VAD+SRLA
Sbjct:  630 AALQSVAPKAQQQFAAGDYTASLQTLAALRAPVDAFFEHVMVNAEDPALKANRLGLLATLHEAMNRVADLSRLA 703          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_LEPCP (Glycyl-tRNA synthetase beta subunit OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=glyS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.343e-17
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = -1
Query:  283 SSPRKRRWPAAIAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 531
            + P +++  AA+A ++P A+A  A G++AA+L+ LA  + PVDAFF D+MV AEDPA+RANRL LL  LH  MN+VA+++RLA
Sbjct:  630 AEPAEQQLAAALAQVQPGADALFAQGEYAASLQALAALKAPVDAFFDDVMVNAEDPALRANRLGLLATLHGAMNRVAELARLA 712          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_METFK (Glycyl-tRNA synthetase beta subunit OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glyS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.817e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = -1
Query:  283 AIAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 501
            A+A ++PQA+   AAGD+  +L+ LA  + PVDAFF  +MV AEDPA++ NRLALL  LH  MNQVAD+SRLA
Sbjct:  635 ALAQVQPQAQQAFAAGDYTGSLKALAALKAPVDAFFDHVMVNAEDPALKTNRLALLATLHQAMNQVADLSRLA 707          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_DECAR (Glycyl-tRNA synthetase beta subunit OS=Dechloromonas aromatica (strain RCB) GN=glyS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.817e-17
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = -1
Query:  283 AIAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 501
            A+  + PQA+A    GD++ +L+ LA  R PVDAFF D+MV AEDPA+RANRL LL +LH  MNQVADIS+L+
Sbjct:  639 ALVEVVPQADAAFVTGDYSESLQALAALRAPVDAFFDDVMVNAEDPALRANRLGLLAKLHAAMNQVADISKLS 711          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_THIDA (Glycyl-tRNA synthetase beta subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glyS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.903e-17
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = -1
Query:  283 AAIAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 504
            AA+  + P+A A   +GD+ A+L+ LA  + PVDAFF  +MV A+DPA+RANRLALL QLH  MN+VADISRLA
Sbjct:  627 AALDEVAPRAAAAFGSGDYTASLQALAALKAPVDAFFDQVMVNADDPALRANRLALLNQLHRTMNRVADISRLA 700          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_RALSO (Glycyl-tRNA synthetase beta subunit OS=Ralstonia solanacearum GN=glyS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.844e-16
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  283 AIAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 501
            A+A   P      A GDF   L+TLA  RE VD+FF  +MVMA+D A+R NRLALLG+LH LMN+VADIS+LA
Sbjct:  624 AVATSEPHVHDAFARGDFTTALKTLASLREAVDSFFDGVMVMADDTALRDNRLALLGELHGLMNRVADISKLA 696          
BLAST of EY674930 vs. ExPASy Swiss-Prot
Match: SYGB_JANMA (Glycyl-tRNA synthetase beta subunit OS=Janthinobacterium sp. (strain Marseille) GN=glyS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.886e-15
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = -1
Query:  283 IAALRPQAEAQLAAGDFAANLRTLAQAREPVDAFFADIMVMAEDPAVRANRLALLGQLHTLMNQVADISRLA 498
            +  ++PQAEA  A GD+ A+L+ LA  R PVDAFF  +MV AED A+R NR  LL  LH  MNQVADIS+LA
Sbjct:  628 LTTVKPQAEAAFARGDYTASLQALAALRNPVDAFFDGVMVNAEDIALRNNRQGLLATLHQAMNQVADISKLA 699          
The following BLAST results are available for this feature:
BLAST of EY674930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GMHB_PSEAE1.561e-2160.49D,D-heptose 1,7-bisphosphate phosphatase OS=Pseudo... [more]
GMHB_NEIMB3.256e-1957.14D,D-heptose 1,7-bisphosphate phosphatase OS=Neisse... [more]
GMHB_NEIMA3.256e-1957.14D,D-heptose 1,7-bisphosphate phosphatase OS=Neisse... [more]
SYGB_DELAS6.166e-1860.81Glycyl-tRNA synthetase beta subunit OS=Delftia aci... [more]
SYGB_LEPCP2.343e-1753.01Glycyl-tRNA synthetase beta subunit OS=Leptothrix ... [more]
SYGB_METFK6.817e-1758.90Glycyl-tRNA synthetase beta subunit OS=Methylobaci... [more]
SYGB_DECAR6.817e-1758.90Glycyl-tRNA synthetase beta subunit OS=Dechloromon... [more]
SYGB_THIDA8.903e-1759.46Glycyl-tRNA synthetase beta subunit OS=Thiobacillu... [more]
SYGB_RALSO9.844e-1658.90Glycyl-tRNA synthetase beta subunit OS=Ralstonia s... [more]
SYGB_JANMA4.886e-1558.33Glycyl-tRNA synthetase beta subunit OS=Janthinobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-003-C09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674930 ID=EY674930; Name=EY674930; organism=Citrus sinensis; type=EST; length=1062bp
GGACTTGCAGTACGGTCCGGATTCCCGGGTCGACGCTGCCGCCGGCCGCG
GCCAGCTCGCCCCTTATCTTGGTGTGGATGGCGGTCAGCGTGTCCATGTC
CAACAGGCCACGGGCCAGGCCCGACTGGTTGGTGGCGACCACCACCGTCC
AGTCCGCCTGGGTCAGGCGGGCGATGGCCTGCAGGCTGCCGGGCAGGGCG
ATCCATTCGTCGGGACTTTTGACGAAGGCGTCGCTGTCCTGGTTGATGAC
GCCGTCGCGGTCGAGGATGATGAGCTTCACTGTGCCAGCCTGGAAATGTC
AGCGACCTGGTTCATCAGGGTGTGCAGCTGGCCCAGCAGCGCCAGCCGGT
TGGCGCGCACCGCCGGGTCTTCGGCCATGACCATGATGTCGGCGAAGAAG
GCGTCCACCGGCTCGCGCGCCTGCGCCAGGGTGCGCAGGTTGGCGGCGAA
GTCGCCGGCTGCCAGTTGCGCCTCGGCCTGCGGGCGCAGCGCGGCGATGG
CGGCGGGCCAGCGCCTTTTTCGGGGGCTCGACCAATGTCGGCATCATTTG
ATCTTAGCCAATCTAGACCTCTGGAATTCTAGTAAAAGGTCCAAGAAACA
TCATAGGACACAGGCCGGGCAATAGGGATAAAAAATTAAAAACACCAGCC
CCCAGATCACCAACGTCGTTCCAAATCAATAAATAACATTCAAATAATAA
TGAAGGCGCATTAATAAACATGTATTTATAAGATTATACGACAGGAATGT
ATTAAAAATTTATAACCGGTACTTATTAATTTCATCCTTAAGTAGTTATA
ATTTATGACAATGTAATTAATAGTAACAACAAATAAAAAATAACTAAATA
TAAGTATCATTCTAAACAAACATAAAGCGAAAACTAAAATAAATATCTTA
ACAAGTAGGTTGGAGCAATCTTAAAAAATTAGTTAATCTAGATTTGTATA
TGCAAAACAATATGATAAAGTGTCATTTAAACGAAATTTCAAATTAGACT
AATGATTATATATGCTATATCGATTACAATCCATATTTACGATATTTAAT
AATCTTGACATT
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