EY674902

Overview
NameEY674902
Unique NameEY674902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length983
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig411 contig Csv1_Contig411:13..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY674902 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.019e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:   47 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 409
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of EY674902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.019e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-H06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674902 ID=EY674902; Name=EY674902; organism=Citrus sinensis; type=EST; length=983bp
AGAGGTTAAAGATTTACAAACTAGCAGCTAAATTGTAAATTTAAAGATGC
TAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGC
CTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGG
TGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGC
CAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTG
TCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAA
CCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATC
CTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGC
AAGCATCATCACTAGTGGATGATACGCTACAGCGATGTAAATGAATGTGA
TGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCG
TTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTT
GTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACT
AAAAGTAAAATTAAAGACTGTGATGTTTTTATATCATAAATTTTAATAAT
TGTATGGGAGGGGAAGATTTGTAAACCTGGGGGCGGGAAATGAAAAGGGT
TGCGGGTTTTTGGGTTTAGGGAAATGTTTTTTAATGGCCATTTTTTGAAA
AAACCCAAAATCCTCCCCTCTCGGGGAAGGGGCCGGGGAAAGAAAAATAT
TGTTTTTTTTTATATAAAAAAAAAAATTTTGCTTTCCTCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGGGGGGGGGCGCGCCCCCCTCCCCAAAAGAGAAAATCTACAAAAA
CCCCTTTTTAAATATATCACCCCCGCGGGTGGG
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