EY674899

Overview
NameEY674899
Unique NameEY674899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.233e-35
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  233 DYYDESSTL-YPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANE 391
            DY DE S   YPC+SSKGY+G+G IQLSWNFNYGPAG+   FD L AP TV+N+
Sbjct:  148 DYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSND 201          

HSP 2 Score: 71.2478 bits (173), Expect = 3.233e-35
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  394 VIAFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGNPCTV 525
            V++FKTALW+W   V+ V+NQGFGA+I+AING LECDG NP TV
Sbjct:  203 VVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTV 246          

HSP 3 Score: 41.5874 bits (96), Expect = 3.233e-35
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  513 PLHCSSRIRYFSECCNQLGVSTGDNLTC 596
            P    +R+ Y++E C QLGV+TGDNLTC
Sbjct:  243 PTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.184e-31
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 2
Query:  224 PQ*DYYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVA 385
            P  +Y DE+ST +PC + KGYYG+G +Q+SWNFNYGPAG  IGFD L  P  VA
Sbjct:  145 PSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVA 198          

HSP 2 Score: 65.0846 bits (157), Expect = 5.184e-31
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  394 VIAFKTALWFWTNSVQS--VMNQGFGASIQAINGELECDGGNPCTV 525
            V+AF+TALW+WTN+V    V  QGFGA+I+AING LECDG NP  V
Sbjct:  202 VLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAV 247          

HSP 3 Score: 34.6538 bits (78), Expect = 5.184e-31
Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = 3
Query:  513 PLHCSSRIRYFSECCNQLGVSTGDNLTC 596
            P   S+R+ Y+ + C Q GV  G NLTC
Sbjct:  244 PTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.546e-29
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 2
Query:  233 DYYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANE 391
            DY D+S+  +PC   K YYG+G +Q+SWNFNYGPAG  IGFD L  P  VA +
Sbjct:  164 DYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQD 216          

HSP 2 Score: 68.9366 bits (167), Expect = 1.546e-29
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  397 IAFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGNPCTVH 528
            I+FKTALWFW N+V  VM+QGFGA+I+AING LEC+G NP  V+
Sbjct:  219 ISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVN 262          

HSP 3 Score: 31.187 bits (69), Expect = 1.546e-29
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  525 SSRIRYFSECCNQLGVSTGDNLTC 596
            ++R+ Y+ + C Q GVS G NL C
Sbjct:  262 NARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 5.050e-26
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  397 IAFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGNPCTVH 528
            +AF+T LWFW NSV+ V+NQGFGA+I+AING +EC+GGN   V+
Sbjct:  203 VAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVN 245          

HSP 2 Score: 61.6178 bits (148), Expect = 5.050e-26
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 2
Query:  233 DYYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVAN 388
            DY DE++  YPC   KGY+G+G IQLSWN+NYG  G  +  + L  P  V++
Sbjct:  148 DYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSS 199          

HSP 3 Score: 34.2686 bits (77), Expect = 5.050e-26
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 3
Query:  525 SSRIRYFSECCNQLGVSTGDNLTC 596
            ++RIRY+ + C QLGV  G NL+C
Sbjct:  245 NARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.945e-25
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 2
Query:  233 DYYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANE 391
            DY D+++  +PC   K YYG+G +Q+SWN+NYGPAG  IGFD L  P  VA +
Sbjct:  167 DYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQD 219          

HSP 2 Score: 67.3958 bits (163), Expect = 3.945e-25
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
Query:  397 IAFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGNPCTVH 528
            I+FKTALWFW N+V  VM QGFGA+I+AING LEC+G NP  V+
Sbjct:  222 ISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVN 265          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.138e-25
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  385 Q*AVIAFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGNPCTVHLVLG 540
            Q AVIAFKTALWFW N+V  VM QGFGA+I+AING LEC+G NP  ++  +G
Sbjct:  210 QDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVG 261          

HSP 2 Score: 62.3882 bits (150), Expect = 5.138e-25
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  236 YYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANE 391
            Y D S+  +PC + + YYG+G +Q+SWN+NYGPAG  IGF+ L  P  VA +
Sbjct:  160 YCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQD 211          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.549e-23
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1
Query:  400 AFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGN 513
            +FK A+WFW  +V SVMNQGFGA+ +AING LEC+G N
Sbjct:  223 SFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQN 260          

HSP 2 Score: 59.6918 bits (143), Expect = 1.549e-23
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 2
Query:  245 ESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANE 391
            + +  YPC + K YYG+G +QLSWN+NY  AG  IGFD L  P  VA +
Sbjct:  171 DKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATD 219          

HSP 3 Score: 31.187 bits (69), Expect = 1.549e-23
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  525 SSRIRYFSECCNQLGVSTGDNLTC 596
            + RI+++ + C   GV+ GDNLTC
Sbjct:  265 NDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.860e-22
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 2
Query:  236 YYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANE 391
            Y D +   +PC + + YYG+G +Q+SWN+NYGPAG  IGFD L  P  VA +
Sbjct:  149 YCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARD 200          

HSP 2 Score: 62.3882 bits (150), Expect = 2.860e-22
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:  373 GNCCQ*AVIAFKTALWFWTNSVQSVMNQGFGASIQAINGELECDGGNPCTVHLVLG 540
            G   + AV+AFK ALWFW NSV  V+ QGFGA+ +A+   LEC G NP  ++  +G
Sbjct:  195 GRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVG 250          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 2.177e-21
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 2
Query:  239 YDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVANEQL 397
            Y + S  YPCN +K Y+G+G +QLSWN+NY  AG  + FD LN P  V  + +
Sbjct:  127 YCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPI 179          

HSP 2 Score: 51.6026 bits (122), Expect = 2.177e-21
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1
Query:  394 VIAFKTALWFWTNS-VQSVM---NQGFGASIQAINGELECDGGN 513
            +I+FKT+LWFW    VQ V+   NQGFGA+I+ ING  ECDG N
Sbjct:  179 IISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHN 222          

HSP 3 Score: 33.113 bits (74), Expect = 2.177e-21
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  528 SRIRYFSECCNQLGVSTGDNLTC 596
            +R+ Y+ E C QLGVS G+NL C
Sbjct:  228 ARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of EY674899 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.148e-16
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 2
Query:  224 PQ*DYYDESSTLYPCNSSKGYYGQGQIQLSWNFNYGPAGNRIGFDELNAPATVAN 388
            PQ  Y D +   +PC   K Y+G+G IQ+SWNFNYGPAG  +GFD L  P  VAN
Sbjct:  139 PQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVAN 193          

HSP 2 Score: 31.9574 bits (71), Expect = 1.148e-16
Identity = 22/69 (31.88%), Postives = 27/69 (39.13%), Query Frame = 1
Query:  397 IAFKTALWFWTN------SVQSVM---------------NQGFGASIQAINGELECDGGNPCTVHLVLG 540
            IAF+TALWFW        S   VM                 GFG     +NG LEC+      V+  +G
Sbjct:  197 IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIG 265          

HSP 3 Score: 26.1794 bits (56), Expect = 1.148e-16
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 3
Query:  525 SSRIRYFSECCNQLGVSTGDNLTC 596
            ++RI ++   C  LGV  G NL C
Sbjct:  261 NNRIGFYRRYCQVLGVDVGPNLDC 284          
The following BLAST results are available for this feature:
BLAST of EY674899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CHI4_PHAVU3.233e-3566.67Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI6_ORYSJ5.184e-3161.11Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.546e-2956.60Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA5.050e-2663.64Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI5_ORYSJ3.945e-2552.83Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE5.138e-2565.38Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU1.549e-2365.79Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE2.860e-2250.00Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA2.177e-2147.17Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI10_ORYSJ1.148e-1654.55Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-H03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674899 ID=EY674899; Name=EY674899; organism=Citrus sinensis; type=EST; length=1000bp
CCCACGCGTCCGGTAAAACACAATAAATACACAAGCTGTCAGAACAATTA
CAAAAAGAAAGTCAACAAAAAATAAATGAAGGAGATATATAAATAGATTT
TGTGGGTAGTAGTTGCCTGGTGGATTGGTAGTTGTTATAATTATGTACAT
TTCATGATTGCATTCCAAAAGTCATCATTCATCTTTGCATGTGTTCCACA
TTTATCATGCTTGTCTACCATGTCCGCAATAGGACTATTATGATGAATCA
AGCACTCTATATCCATGCAATTCAAGCAAAGGTTACTACGGCCAGGGACA
AATTCAACTATCTTGGAATTTCAACTACGGACCTGCCGGAAACAGAATTG
GCTTTGACGAATTAAACGCGCCGGCAACTGTTGCCAATGAGCAGTTATAG
CATTCAAGACTGCTTTATGGTTCTGGACAAACAGTGTTCAATCTGTAATG
AACCAAGGATTTGGGGCAAGCATTCAGGCCATTAATGGTGAACTTGAATG
TGATGGTGGAAACCCTTGCACTGTTCATCTCGTATTAGGTACTTCTCTGA
GTGCTGCAACCAATTGGGAGTTTCTACTGGAGATAATCTCACTTGTTAAT
ATCATCATAAAAACTGTAATGACCCAAAAAAAAAAAAAAAAATTACCAGG
CTCTCAATAAATAACCAATTTATATAAATAAAAAAATTCTTTTACCTGGC
AAAAAAAAAAAAAAAAGGGGCGCCCGCTCTAAAAAGGATTCCAGCTTTAA
TTTCCCCGGGGCATGGCAAACCCCAAAACCTCTTTTTAAAGGGGGTCCCC
AAAATTTTCATTTTCCTGGGGCCCCCCTTTTTTTAAACCCCTCGGGGGGG
GGGGGAAAAACCCCTGGGGCGTTTTCCCCCAATTTTATATCCCCCCTTGT
GCCACCACCACTCCCCCCCCTTTTTCCCCCCCCCCGGGGGGGGGAAAAAA
AAAAAAAAAAAAAAAAAAAGCGCCCCCCCCCACCCCCCCATTTTCTCTCC
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