EY674895

Overview
NameEY674895
Unique NameEY674895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length998
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674895 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.618e-50
Identity = 99/161 (61.49%), Postives = 115/161 (71.43%), Query Frame = 1
Query:   34 LASRLLFIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQ-KDLRTRKVKRQGPVAAFDSYXXXXXXXXXXELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIMAAAMVAAHVSE 513
            LASRLLF+VLTVCVSH+A   GSK+P G +N+  +E T D +  + R R  KRQGPVA FDSY          ELQL P +S++GNHS  KD+  +  P K  G SNE  +SI SAI HT RIL ILEALFSLKPSS+GTSW YSSNEI+AAAMVAAHVSE
Sbjct:  580 LASRLLFVVLTVCVSHQALPGGSKRPTGSDNHSSEEVTNDSRLTNGRNRCKKRQGPVATFDSYVLAAVCALSCELQLFPFISKNGNHSNLKDSIKIVIPGKTTGISNELHNSISSAILHTRRILGILEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHVSE 740          

HSP 2 Score: 35.8094 bits (81), Expect = 1.618e-50
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  515 LFRRSRACMHALSVWMRCRWEYEI 586
            LFRRSR C++ALS   +C+W+ EI
Sbjct:  741 LFRRSRPCLNALSALKQCKWDAEI 764          

HSP 3 Score: 23.8682 bits (50), Expect = 1.618e-50
Identity = 11/28 (39.29%), Postives = 16/28 (57.14%), Query Frame = 3
Query:  633 GKRLAPIGKKGEPIESHL*GRPLFGGDP 716
            GK +  I  K EP+E+HL   P+   +P
Sbjct:  779 GKTVTSIVNKAEPLEAHLTLTPVKKDEP 806          
BLAST of EY674895 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.875e-49
Identity = 98/166 (59.04%), Postives = 118/166 (71.08%), Query Frame = 1
Query:   34 LASRLLFIVLTVCVSHEAQSNGSKKPRGE-----ENYFPDESTEDLQK-DLRTRKVKRQGPVAAFDSYXXXXXXXXXXELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIMAAAMVAAHVSE 513
            LASRLLF+VLTVCVSHEAQS+GSK+PR E     EN   ++   + Q  + ++R VK QGPVAAFDSY          E+QL P++S  GN S S  A  + KP KING+S E  + I+SAI HT RIL ILEALFSLKPSS+GT W YSS+EI+AAAMVAAH+SE
Sbjct:  584 LASRLLFVVLTVCVSHEAQSSGSKRPRSEYASTTENIEANQPVSNNQTANRKSRNVKGQGPVAAFDSYVLAAVCALACEVQLYPMISGGGNFSNSAVAGTITKPVKINGSSKEYGAGIDSAISHTRRILAILEALFSLKPSSVGTPWSYSSSEIVAAAMVAAHISE 749          

HSP 2 Score: 38.891 bits (89), Expect = 3.875e-49
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 2
Query:  515 LFRRSRACMHALSVWMRCRWEYEILK*GQHLCINPLKIPRKAVGS 649
            LFRRS+A  HALS  MRC+W+ EI K    L  N + +  K V S
Sbjct:  750 LFRRSKALTHALSGLMRCKWDKEIHKRASSL-YNLIDVHSKVVAS 793          
The following BLAST results are available for this feature:
BLAST of EY674895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ORYSJ1.618e-5061.49Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
GIGAN_ARATH3.875e-4959.04Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-G09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674895 ID=EY674895; Name=EY674895; organism=Citrus sinensis; type=EST; length=998bp
CCACGCGTCCGGAATCATGTGCCTCTCCCTTTTCTTGCATCACGCCTACT
ATTTATTGTCTTAACTGTGTGTGTTAGCCATGAAGCTCAGTCCAACGGGA
GCAAGAAACCAAGAGGTGAAGAAAATTATTTTCCTGATGAAAGCACCGAG
GACTTACAGAAAGATCTGAGAACTAGAAAGGTGAAAAGACAAGGGCCTGT
AGCAGCATTTGATTCATATGTTTTGGCTGCTGTCTGTGCTCTTGCTTGTG
AGCTTCAGTTGGTTCCTTTGGTCTCAAGGTCTGGTAATCATTCAAAGTCC
AAAGATGCACAAATTCTAGCCAAGCCTGCCAAAATAAATGGAAATTCTAA
TGAGTGCAAAAGTAGTATTGAATCAGCGATTCATCATACTCACAGAATCT
TAACAATATTAGAGGCGCTGTTCTCACTGAAGCCATCCTCTATAGGCACA
TCATGGGGTTACAGTTCAAATGAGATAATGGCTGCTGCTATGGTTGCTGC
ACATGTATCAGAACCTGTTTAGACGGTCCAGGGCTTGCATGCATGCTCTC
TCTGTCTGGATGCGATGCAGGTGGGAATATGAAATTTTAAAGTAGGGGCA
ACATCTCTGTATTAACCCCTTGAAAATTCCCAGGAAAGCGGTTGGCTCCG
ATTGGTAAAAAGGGTGAACCCATTGAAAGCCACCTTTAAGGGAGGCCCCT
TTTTGGAGGGGACCCCCTTGGTGGGTTCCGAGGGCCAAAAACCACAATAG
GGGGGGGAAGGGGGGGCTCACCTTCCACCCTGAAAAGGGCTCCCTCCCCC
CCTATTGGGAGAACCTCTCACACCCACCCCAAAATTTTTCCTTTTAAAGG
GGGAGGGGGTTCCACCGGCGCTCGGGAGTAAAAGACCCCCGAGAAAGGGG
GTTGTGGGGATAACGGGGGCTTTTAGGGATGTCTTCCCTTAGGGGGGGAG
ACGCCTTCCAAAGATATTACTCCACCATCATTCCCCCCCCCCCCAACC
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