EY674894

Overview
NameEY674894
Unique NameEY674894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1081
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_ARATH (Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 5.036e-68
Identity = 122/165 (73.94%), Postives = 136/165 (82.42%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQK 564
            AEVKKASPSRGIL+E+FDPVEIA++YEKGGAACLS+LTD+KYF+G FENLEA+RSAGVKCPLLCKEF+VD WQIYYARTKGADAVLLIAAVL DL+I ++ KICK L L ALVEVHDEREM RV                 TFEVDISNTKKLLEGE G  IR++
Sbjct:  184 AEVKKASPSRGILKENFDPVEIAQAYEKGGAACLSVLTDQKYFQGGFENLEAIRSAGVKCPLLCKEFVVDPWQIYYARTKGADAVLLIAAVLADLEITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRER 348          

HSP 2 Score: 36.1946 bits (82), Expect = 5.036e-68
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 2
Query:  560 KRNIIVVG*IWGLFTPDDIAYVQEAGC*SCSGWGSPIGET---RRPPGREITGIF 715
            +R++IVVG   GLFTPDDIAYVQ AG  +       +GE+   +  P + I G+F
Sbjct:  347 ERDMIVVGES-GLFTPDDIAYVQAAGVKAVL-----VGESIVKQNDPEKGIAGLF 395          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_MICAN (Indole-3-glycerol phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=trpC PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.963e-47
Identity = 100/165 (60.61%), Postives = 120/165 (72.73%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEIIRQK 564
            AEVKKASPS+G++ EDFDPV IAR+YE+GGA CLS+LTD K+F+GS+ENL  VR A V  PLLCKEFI+  +QIYYAR+KGADAVLLIAA+L D D+ Y  KI K LG+TALVEVH   E DRV                 TF VD+ NT++LLE  RGE +R+K
Sbjct:   83 AEVKKASPSKGVILEDFDPVAIARTYEQGGATCLSVLTDSKFFQGSYENLTLVRQA-VSLPLLCKEFILYPYQIYYARSKGADAVLLIAAILSDQDLAYFVKIVKGLGMTALVEVHSLAEFDRVLAIEGIELIGINNRNLETFTVDLDNTRQLLEA-RGEQVREK 245          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP8 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=trpC PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.871e-46
Identity = 94/161 (58.39%), Postives = 115/161 (71.43%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEI 552
            AEVKKASPS+G++REDFDPV IA++Y KGGA+CLS+LTD K+F+GSFENL  VR + V  PLLCKEFI+  +QIY ARTKGADAVLLIAA+L D D+ Y  KI + LG+TAL+EVH   E+DRV                 TFEVD+  T +LL   R +I
Sbjct:   83 AEVKKASPSKGVIREDFDPVAIAQAYVKGGASCLSVLTDAKFFQGSFENLALVRQS-VDLPLLCKEFILYPYQIYLARTKGADAVLLIAAILSDRDLSYFLKIIQTLGMTALIEVHSLTELDRVLAIEGVSLIGINNRNLETFEVDLKTTSQLLAARRDKI 242          

HSP 2 Score: 26.9498 bits (58), Expect = 3.871e-46
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  593 GLFTPDDIAYVQEAG 637
            GL TPDD+ +VQ+AG
Sbjct:  254 GLHTPDDLQFVQQAG 268          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNY3 (Indole-3-glycerol phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=trpC PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 6.708e-44
Identity = 94/161 (58.39%), Postives = 115/161 (71.43%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEI 552
            AEVKKASPS+GI+R DFDPV IA++YE GGA CLS+LTDEK+F+GSFENL+ VRSA V+ PLLCKEFI+  +QIY AR++GADAVLLIAA+L D D+RY  KI + LG+ ALVEVH   EMDRV                 TF VD+  T+ L    R ++
Sbjct:   83 AEVKKASPSKGIIRADFDPVAIAKAYEAGGANCLSVLTDEKFFQGSFENLQLVRSA-VQLPLLCKEFIIYPYQIYLARSRGADAVLLIAAILSDKDLRYFLKIIEGLGMAALVEVHTLEEMDRVLALDGVQLIGVNNRNLQTFTVDLQTTEDLFAQRREQL 242          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_CYAA5 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=trpC PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.399e-41
Identity = 88/161 (54.66%), Postives = 112/161 (69.57%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEI 552
            AEVKKASPS+G++REDF+PV IA++Y +GGA+CLS+LTD K+F+GSF+NL  VR A V  PLLCKEFI+  +QIY AR KGADA+LLIAA+L D D++Y+ KI   LG+T LVEVH   E+DRV                 TFEV +  T  L+   + EI
Sbjct:   83 AEVKKASPSKGVIREDFEPVAIAQAYVQGGASCLSVLTDSKFFQGSFDNLALVRQA-VDIPLLCKEFIIYPYQIYLARVKGADAILLIAAILKDSDLQYLIKIIHGLGMTPLVEVHSLAELDRVLAIEGVSLVGINNRNLETFEVSLETTTNLITARQDEI 242          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNSC (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=trpC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.638e-40
Identity = 84/154 (54.55%), Postives = 108/154 (70.13%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AEVKKASPS+G++REDFDPV IA++Y  GGA+CLS+LTD+ +F+G F+ L  VR A V  PLLCKEF++  +Q++ AR  GADAVLLIAA+L D D+RY+ K    LGLT LVEVHD  EMDRV                 +FE D++ T++LL
Sbjct:   83 AEVKKASPSKGVIREDFDPVAIAKAYASGGASCLSVLTDKTFFQGGFDVLVEVRQA-VDLPLLCKEFVLSPYQLFQARAAGADAVLLIAAILSDQDLRYLNKAAAALGLTVLVEVHDATEMDRVLSIGGFPLIGINNRDLTSFETDLATTERLL 235          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNP6 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpC PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.309e-39
Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKL 528
            AEVKKASPS+G+LREDFDPV IA++Y   GAAC+S+LTDEK+F+G FENL+ VR+A V  PLLCK+F++  +QIY AR  GADAVLLIAA+L D D+RY  KI   LGL ALVEVH   E++RV                 TF  D++ T+ L
Sbjct:   84 AEVKKASPSKGVLREDFDPVAIAQAYAANGAACISVLTDEKFFQGGFENLQRVRAA-VDVPLLCKDFVIYPYQIYKARLLGADAVLLIAAILSDADLRYFLKIAHSLGLNALVEVHSLPELERVLALDDLRLVGINNRNLKTFVTDLAVTEHL 235          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_SYNE7 (Indole-3-glycerol phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=trpC PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.309e-39
Identity = 86/153 (56.21%), Postives = 107/153 (69.93%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKL 528
            AEVKKASPS+G+LREDFDPV IA++Y   GAAC+S+LTDEK+F+G FENL+ VR+A V  PLLCK+F++  +QIY AR  GADAVLLIAA+L D D+RY  KI   LGL ALVEVH   E++RV                 TF  D++ T+ L
Sbjct:   84 AEVKKASPSKGVLREDFDPVAIAQAYAANGAACISVLTDEKFFQGGFENLQRVRAA-VDVPLLCKDFVIYPYQIYKARLLGADAVLLIAAILSDADLRYFLKIAHSLGLNALVEVHSLPELERVLALDDLRLVGINNRNLKTFVTDLAVTEHL 235          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_ACAM1 (Indole-3-glycerol phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=trpC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.710e-39
Identity = 85/154 (55.19%), Postives = 111/154 (72.08%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLL 531
            AEVKKASPS+G+LRE+FDPV IA++YE  GA+CLS+LTD ++F+GSF+ L+ +R+A V  PLLCKEF++  +QIY AR++GADAVLLIAA+L D D+ Y  KI K LG+TALVEVH   E++RV                 TF VD+  T +LL
Sbjct:   83 AEVKKASPSKGVLRENFDPVAIAQAYEAAGASCLSVLTDAEFFQGSFDYLQQIRAA-VSLPLLCKEFVIYPYQIYLARSRGADAVLLIAAILSDQDLTYFLKIIKSLGMTALVEVHTLPELERVMDIPGIELIGINNRDLETFTVDLEVTCQLL 235          
BLAST of EY674894 vs. ExPASy Swiss-Prot
Match: TRPC_TRIEI (Indole-3-glycerol phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=trpC PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.917e-39
Identity = 81/161 (50.31%), Postives = 110/161 (68.32%), Query Frame = 1
Query:   70 AEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKMLGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDISNTKKLLEGERGEI 552
            AEVKKASPS+G++R+DF+PV IA+ Y++  A C+S+LTD K+F+GSFENL  +R   V  PLLCK+F++  +QIY+AR  GADAVLLIAA+L D D++Y  KI   LG+TALVEVH  +E+DRV                  F VD+  T +L+E  + E+
Sbjct:   83 AEVKKASPSKGVIRQDFEPVAIAKLYQENAATCISVLTDRKFFQGSFENLANIRE-NVDLPLLCKDFLIYPYQIYFARLYGADAVLLIAAILSDQDLKYFIKIVNSLGMTALVEVHTLKELDRVLGIEGVKLIGINNRNLEDFSVDLQTTFQLMEARKKEL 242          
The following BLAST results are available for this feature:
BLAST of EY674894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
TRPC_ARATH5.036e-6873.94Indole-3-glycerol phosphate synthase, chloroplasti... [more]
TRPC_MICAN4.963e-4760.61Indole-3-glycerol phosphate synthase OS=Microcysti... [more]
TRPC_CYAP83.871e-4658.39Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNY36.708e-4458.39Indole-3-glycerol phosphate synthase OS=Synechocys... [more]
TRPC_CYAA51.399e-4154.66Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_SYNSC2.638e-4054.55Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNP61.309e-3956.21Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNE71.309e-3956.21Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_ACAM11.710e-3955.19Indole-3-glycerol phosphate synthase OS=Acaryochlo... [more]
TRPC_TRIEI2.917e-3950.31Indole-3-glycerol phosphate synthase OS=Trichodesm... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-G08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674894 ID=EY674894; Name=EY674894; organism=Citrus sinensis; type=EST; length=1081bp
CGGGCGGGTACGGGTCCGGGAATTCCGGGTCGACCCCGCGTCCGCGGACG
CGTGGGCGGCCCCTTGGGTGCTGAAGTAAAGAAGGCTTCTCCGAGCAGAG
GAATCCTAAGAGAGGATTTTGATCCAGTTGAAATTGCCCGATCTTATGAG
AAAGGTGGAGCAGCATGTCTCAGTATTTTGACAGATGAAAAGTATTTTAA
GGGAAGCTTTGAAAACTTGGAGGCTGTAAGGAGTGCAGGAGTGAAGTGCC
CCCTATTGTGCAAAGAATTCATTGTAGACGCATGGCAGATCTACTATGCC
CGAACTAAAGGTGCAGATGCAGTTCTTCTGATCGCTGCTGTTTTGCCTGA
TCTTGATATCAGATACATGACTAAGATCTGCAAGATGCTTGGTTTGACTG
CACTTGTTGAGGTTCATGACGAGAGGGAAATGGATCGTGTTCTTGGAATT
GAGGGGATTGAACTTATTGGTATTAACAATCGGAACCTTGAGACGTTTGA
GGTTGATATTAGTAACACAAAGAAACTTCTTGAAGGAGAGCGTGGTGAAA
TAATCCGTCAAAAGAAACATAATTGTGGTTGGGTGAATCTGGGGCTTATT
TACTCCCGATGATATCGCATACGTACAAGAAGCTGGGTGTTAAAGCTGTT
CTGGGTGGGGGAGTCCAATAGGGGAAACAAGACGACCCCCGGGAAGGGAA
ATAACGGGAATTTTTTGGAAAAAAAAAATTTCCTGGAATGACCCCCCTAT
TTTTTTGGGTTTCCCACAAAAGGGTCCGGGGGGAAAGGTATTTTCAAATA
GGAAAAAAAAAAAAAAAGCCCCCCTTTTTGGTTTCCAATAAAATATAAAT
TAAAGCCCCCCCCCCCCTTAATGGTGTTTTCTTATACGCCCCTTTTTTTC
CCCTTTTTTCCCTTTTTTGTATTTTTTTGGGATAACTTTTTCCCCCAAAA
GGGGAGAAAAGGGGAAAAAAAAATGTGGGTTTTTGTGGAATCCCTGAAAA
AAGGGAAATGAGGGGGGGTAATGTTGGGTTGGTGGTGGGGGGGAGATTAG
GAAGAAAAATAAATATAATTAAAAAAAAAAA
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