EY674888

Overview
NameEY674888
Unique NameEY674888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674888 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 2 
Query:   50 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVNEGGEAESSSGKFHRSLXXXXXXXXXXXXXXXXXXXXXRNDNVWRSVFHPGNNLATKGIDAEVFDKP 346
            +L+KLWDD+VAGPQP+RGLG LRK+   P  +N   E ESS                             R DNVWRSVFHPG+NL++K +  +VFD P
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKV---PQPLNLKDEGESSK---------ITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP 89
The following BLAST results are available for this feature:
BLAST of EY674888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.824e-1444.44Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-G02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674888 ID=EY674888; Name=EY674888; organism=Citrus sinensis; type=EST; length=877bp
CGGAAGCGTGGGGGATTCCTAAACTAGCAGCTAAATTGTAAATTTAAAGA
TGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGT
GGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAATGA
GGGTGGTGAGGCGGAGTCGTCATCGGGCAAATTCCATAGGTCTCTGTCAA
TGCCAGCGAGTCCAGCGGCACCGTCTACACCTGTGACGCCGACAACGCCG
CTGTCGGCGCGTAATGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAA
CAACCTTGCTACTAAGGGTATCGATGCAGAGGTCTTTGACAAGCCCACAC
ATCCCTACCTCTCCCACGGTTTATGACTGCAACCAAAATAAGGCCTAGAA
GAAAGAGGAAATCGAGGCAAACCTAGTCACATGTGCCCATTGAAAAATAT
TTTTGTCTTTTTCACCTTTTAAGTTGGGGAAGACTAGGAGCCAGCTATCG
TCTCTGGTTGGAATGATACGCTACAACGAAAGAAAAAGAAAAGCGATTGG
GGTCACCAACCTCACCGAAAAATTACCACGGCAACTTATTGATATATGCA
ATAATCTGATTTGGAATATACAGAAGGCGAACCTTGGACGATATGTAAAG
GGTTTATTGGGATTAGACGAAACTACCAATTCTCAATGTCTCCGTTTTAA
AAATTGCTGCTGGACCAAATATATAACAAACAATTCTGGGATCATTTTTA
ATACCCAATATAGTATAATAGATTTCATAGGAGAATGTTGAGAATGAGAT
TAAACTTATGAAGCTGCAGAAAAAAAAAGAGTTATTGGATTTAATGGAGT
TAAGGAGAAAATGTTTTTATATATGTG
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