EY680078

Overview
NameEY680078
Unique NameEY680078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680078_ssr235 microsatellite EY680078_ssr235:235..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8632 contig Csv1_Contig8632:1..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY680078 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.127e-42
Identity = 100/168 (59.52%), Postives = 118/168 (70.24%), Query Frame = 3
Query:  144 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEGFAMLGLVAFGF 623
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE W     AMLGLVA  F
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGR-IAMLGLVALAF 186          
BLAST of EY680078 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.064e-28
Identity = 82/202 (40.59%), Postives = 117/202 (57.92%), Query Frame = 3
Query:   75 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEGFAMLGLVAFGFPRVC*GWAPLVKL 662
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+W    FAM+GLVA  F     G  PL+ +
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGR-FAMIGLVALAFTEYVKG-GPLINV 199          
BLAST of EY680078 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.303e-26
Identity = 81/193 (41.97%), Postives = 107/193 (55.44%), Query Frame = 3
Query:   87 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEGFAMLGLVAFGFPRVC*GWAPLVKL 662
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELW    FAMLGLVA     +  G AP + +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGR-FAMLGLVALAATEIITG-APFINV 172          
BLAST of EY680078 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.252e-25
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  291 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEGFAMLGLVAFGFPRVC*G 641
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELW    FAM+GLVA     +  G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGR-FAMIGLVALAATEIITG 161          
BLAST of EY680078 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.635e-25
Identity = 69/135 (51.11%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  264 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEGFAMLGLVAFGFPRVC*GWAPLVKL 662
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELW    FAMLGLVA        G AP V +
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGR-FAMLGLVALAATEFITG-APFVNI 231          
BLAST of EY680078 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.436e-13
Identity = 56/120 (46.67%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  267 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWKWEGFAMLGLVA 614
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+     FAM+G  A
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGR-FAMIGFAA 159          
The following BLAST results are available for this feature:
BLAST of EY680078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.127e-4259.52Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.064e-2840.59Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU4.303e-2641.97Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.252e-2551.69Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.635e-2551.11High molecular mass early light-inducible protein ... [more]
CBR_DUNBA1.436e-1346.67Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-B10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680078 ID=EY680078; Name=EY680078; organism=Citrus sinensis; type=EST; length=838bp
CAAGGAACCCGCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTTC
TGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATC
TATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCG
GGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAAT
GTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCA
GAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGA
AGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCG
GCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGC
ATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAG
ACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCG
TCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGG
GTTCATGACTTCGGATGCTGAGTTGTGGAAATGGGAAGGTTTTGCTATGC
TGGGCCTTGTTGCTTTTGGCTTTCCCCGAGTTTGTTAAGGGTGGGCACCC
TTGGTTAAACTTAATTTTTGTTAAATTTGTAAATCTGGATTTTTTTTAAC
TAATTAATGGAGGAAATCCTACTGTAAATTAAATCCCTATTTTCCAGGCC
ATTTCGTAAATTCCACCCCCCATTTTTCAAAAAAAAAAAAAAAAGGGGGG
GCCGCCCCCAAAAGAAACCAAACTTAAATTAACCCGTG
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