EY674878

Overview
NameEY674878
Unique NameEY674878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1014
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC4_ORYSJ (Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.549e-76
Identity = 114/124 (91.94%), Postives = 121/124 (97.58%), Query Frame = 3 
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            MASSA  FIKCVTVGDGAVGKTCMLICYTSNKFPTDY+PTVFDNFSANVV +GTTVNLGLWDTAGQEDYNRLRPLSYRGAD+FVLAFSLVSRASYENV+KKW+PELQHY+PGVP+VLVGTKLDL
Sbjct:    1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGTKLDL 124

HSP 2 Score: 63.5438 bits (153), Expect = 6.549e-76
Identity = 37/63 (58.73%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPAQ 564
            REDKHYL DHP LVPVTTAQGEELRK IG        S KT   ++   FDAAI+   KPP +
Sbjct:  125 REDKHYLLDHPSLVPVTTAQGEELRKHIGATCYI-ECSSKTQQNVK-AVFDAAIKVVIKPPTK 185
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC3_ORYSJ (Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.216e-74
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 3 
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            MASSA  FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV + TTVNLGLWDTAGQEDYNRLRPLSYRGAD+FVLAFSLVSRASYEN++KKWIPELQHY+PGVP+VLVGTKLDL
Sbjct:    1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLDL 124

HSP 2 Score: 60.8474 bits (146), Expect = 1.216e-74
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPA-QTXXXXXXXQRGIPNKCLFGGR 627
            REDKHYL DHP ++PVTTAQGEELRK IG        S KT   ++   FDAAI+   +PP  Q        ++G     +F GR
Sbjct:  125 REDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYI-ECSSKTQQNVK-GVFDAAIKVVIQPPTKQREKKKKKSRQGCSMMNMFRGR 207
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC10_ARATH (Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.586e-74
Identity = 115/124 (92.74%), Postives = 120/124 (96.77%), Query Frame = 3 
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            MASSA  FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTTVNLGLWDTAGQEDYNRLRPLSYRGAD+FVL+FSLVSRASYENV KKWIPELQH++PGVP+VLVGTKLDL
Sbjct:    1 MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLDL 124

HSP 2 Score: 60.8474 bits (146), Expect = 1.586e-74
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKP 555
            REDKHYLADHP L PVTTAQGEELRK IG        S KT   ++   FD+AI+E  KP
Sbjct:  125 REDKHYLADHPGLSPVTTAQGEELRKLIGATYYI-ECSSKTQQNVK-AVFDSAIKEVIKP 182
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC8_ARATH (Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.217e-72
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 3 
Query:    3 MASSAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            MASSA  FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS NVV EG TVNLGLWDTAGQEDYNRLRPLSYRGAD+FVLAFSL+SRASYENV KKWIPELQH++PGVP+VLVGTK+DL
Sbjct:    1 MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMDL 124

HSP 2 Score: 56.225 bits (134), Expect = 3.217e-72
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKP 555
            RED+HYL+DHP L PVTT+QGEELRK IG        S KT   ++   FDAAI+   KP
Sbjct:  125 REDRHYLSDHPGLSPVTTSQGEELRKHIGATYYI-ECSSKTQQNVK-AVFDAAIKVVIKP 182
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.184e-69
Identity = 102/121 (84.30%), Postives = 115/121 (95.04%), Query Frame = 3 
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            SA  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 122

HSP 2 Score: 59.3066 bits (142), Expect = 4.184e-69
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQ-FFDAAIREFNKPPAQ 564
            R+DKH+LADHP  VP+TTAQGEELRK IG    P      +  +  ++  FDAAI+   +PP Q
Sbjct:  123 RDDKHFLADHPGAVPITTAQGEELRKLIGA---PAYIECSSKTQQNVKAVFDAAIKVVLQPPKQ 183
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 6.491e-67
Identity = 104/121 (85.95%), Postives = 115/121 (95.04%), Query Frame = 3 
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            SA  FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDL 122

HSP 2 Score: 51.6026 bits (122), Expect = 6.491e-67
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPAQ 564
            R+DK +  DHP  VP++TAQGEELRK IG        S KT   ++   FDAAI+   +PP Q
Sbjct:  123 RDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYI-ECSSKTQQNIK-AVFDAAIKVVLQPPKQ 183
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.464e-67
Identity = 103/121 (85.12%), Postives = 114/121 (94.21%), Query Frame = 3 
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            SA  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G+TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122

HSP 2 Score: 52.373 bits (124), Expect = 8.464e-67
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQ-FFDAAIREFNKPPAQ 564
            R+DK +  DHP  VP+TTAQGEELRK I     P      + ++  ++  FDAAIR   +PP Q
Sbjct:  123 RDDKQFFVDHPGAVPITTAQGEELRKLINA---PAYIECSSKSQQNVKAVFDAAIRVVLQPPKQ 183
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.104e-66
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = 3 
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            SA  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct:    2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 122

HSP 2 Score: 51.9878 bits (123), Expect = 1.104e-66
Identity = 30/63 (47.62%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPAQ 564
            R+DK +  DHP  VP+TTAQGEEL+K IG      I     + E     FDAAIR   +PP Q
Sbjct:  123 RDDKQFFIDHPGAVPITTAQGEELKKLIGAPAY--IECSSKTQENVKGVFDAAIRVVLQPPKQ 183
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 1.439e-66
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = 3 
Query:   12 SAPWFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            SA  FIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct:    2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 122

HSP 2 Score: 51.6026 bits (122), Expect = 1.439e-66
Identity = 30/63 (47.62%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPAQ 564
            R+DK +  DHP  VP+TT QGEEL+K IG      I     S E     FDAAIR   +PP Q
Sbjct:  123 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY--IECSSKSQENVKGVFDAAIRVVLQPPKQ 183
[Close]
BLAST of EY674878 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.162e-66
Identity = 101/117 (86.32%), Postives = 112/117 (95.73%), Query Frame = 3 
Query:   24 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADIFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 374
            FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGAD+F+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    5 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

HSP 2 Score: 50.0618 bits (118), Expect = 4.162e-66
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:  376 REDKHYLADHPRLVPVTTAQGEELRKPIGGFLLP*IASRKTSAEMEIQFFDAAIREFNKPPAQ 564
            R+DK +  DHP  VP+TT QGEEL+K IG  +     S KT   ++   FDAAI+   +PP Q
Sbjct:  122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYI-ECSSKTQQNVK-AVFDAAIKVVLQPPKQ 182
The following BLAST results are available for this feature:
BLAST of EY674878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC4_ORYSJ6.549e-7691.94Rac-like GTP-binding protein 4 OS=Oryza sativa sub... [more]
RAC3_ORYSJ1.216e-7491.94Rac-like GTP-binding protein 3 OS=Oryza sativa sub... [more]
RAC10_ARATH1.586e-7492.74Rac-like GTP-binding protein ARAC10 OS=Arabidopsis... [more]
RAC8_ARATH3.217e-7290.32Rac-like GTP-binding protein ARAC8 OS=Arabidopsis ... [more]
RAC1_LOTJA4.184e-6984.30Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ORYSJ6.491e-6785.95Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RHO1_PEA8.464e-6785.12Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH1.104e-6685.95Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC6_ARATH1.439e-6685.95Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC4_ARATH4.162e-6686.32Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-F04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674878 ID=EY674878; Name=EY674878; organism=Citrus sinensis; type=EST; length=1014bp
CAATGGCTTCTAGTGCTCCTTGGTTCATCAAGTGTGTAACAGTTGGTGAT
GGAGCTGTTGGCAAAACTTGCATGCTTATTTGCTACACAAGTAACAAGTT
TCCTACTGATTATATACCAACGGTGTTCGACAACTTCAGTGCAAATGTGG
TAGCTGAAGGCACTACTGTCAACTTAGGCCTCTGGGACACAGCTGGGCAA
GAGGATTACAATAGATTAAGGCCTTTGAGCTACAGAGGGGCAGACATTTT
TGTCTTAGCTTTCTCATTAGTCAGTCGAGCCAGCTATGAAAACGTTCTGA
AAAAGTGGATCCCTGAACTTCAGCATTACTCTCCCGGAGTACCAGTTGTA
TTGGTTGGAACCAAATTGGATCTGTCGAGAGGATAAGCATTATTTGGCTG
ATCATCCAAGATTGGTGCCTGTGACCACTGCACAAGGAGAGGAACTCCGC
AAACCGATTGGTGGCTTCCTATTACCTTGAATTGCATCTCGTAAAACCTC
AGCTGAAATGGAAATCCAGTTTTTTGATGCTGCCATCAGGGAATTTAACA
AACCCCCCGCACAAACCAAAAGGAAAAGAAAGAAAAAACAACGAGGGATC
CCTAATAAATGTCTTTTTGGGGGAAGGAACCCCTGAAAAATTTTAAATAA
AAACCCTTCCACCACAAAAAAAATGAAGGAAATGGAAGAATCCCCCGGGT
GGGGTTTTTCCAAAGATACCTATAAGCGGGTTAAAAAAAGGAAACAAGGA
TGGTTTATATTTTTCAAGGGTAGGGTTTTTAGAGGGGGGGTTTGGAACCA
AAATATTCCCTTCTTGAATTGTTCAACCCCTTCTTTTATGGGCTGCTTTT
ATTTTTTCTCTCTCCTTAAGTTCTTAATAAAAAAAAAAAAATATCACCCC
CGCTTACCCACATACTTCGAAAAACCTTAAAAGAATTAATTATGATGGAG
GATGAGTGTATTTCTTTTTTTATTCTTTATTCTAAACAATCCTCCCCCCT
CTTTTCCCGTGATT
back to top