EY674866

Overview
NameEY674866
Unique NameEY674866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1012
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674866 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.960e-39
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 2
Query:   29 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARLILVDLKMENKITKDMSEEELITIRDEVSKYMIEGKI 370
            M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRAR ILVDL+MENKITKDM+EEELI +RDEVSKYMIEG +
Sbjct:    1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114          

HSP 2 Score: 24.6386 bits (52), Expect = 3.960e-39
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  405 KEIKCYRGNRQILG 446
            KEI+CYRG R I G
Sbjct:  126 KEIQCYRGVRHIQG 139          
BLAST of EY674866 vs. ExPASy Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.692e-12
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  152 GLSIQCARVGGV---EIPNNKRIEYSLQYIHGVGRTRARLILVDLKMENKITKDMSEEELITIRDEVSKYMI-----------EGKIEAVQC 385
            G+ +Q   +GG    EIP+NKR+ Y+LQ +HG+GR++A+ I+ +L +ENK  KD+S+ EL +IR+ +SKY+I            G++  +QC
Sbjct:   23 GVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQC 114          
BLAST of EY674866 vs. ExPASy Swiss-Prot
Match: RS13_ACIF5 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsM PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.692e-12
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 2
Query:  170 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARLIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGKI 370
            AR+ GV IPNNK+IE +L YI+G+GRTRAR +L   D+  + ++ KD+SE EL  IR EV+K+++EG +
Sbjct:    2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDL 69          
BLAST of EY674866 vs. ExPASy Swiss-Prot
Match: RS13_ACIF2 (30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.692e-12
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 2
Query:  170 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARLIL--VDLKMENKITKDMSEEELITIRDEVSKYMIEGKI 370
            AR+ GV IPNNK+IE +L YI+G+GRTRAR +L   D+  + ++ KD+SE EL  IR EV+K+++EG +
Sbjct:    2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEVAKFLVEGDL 69          
BLAST of EY674866 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.365e-11
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 2
Query:  170 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARLILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGKI 370
            AR+ G++IPNNKR+E SL YI+G+G+ RA+ IL   K++ NK  KD+S+EEL  IR   S Y++EG +
Sbjct:    2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDL 69          
The following BLAST results are available for this feature:
BLAST of EY674866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RR13_ARATH3.960e-3970.1830S ribosomal protein S13, chloroplastic OS=Arabid... [more]
RT13_SOYBN4.692e-1240.22Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_ACIF54.692e-1252.1730S ribosomal protein S13 OS=Acidithiobacillus fer... [more]
RS13_ACIF24.692e-1252.1730S ribosomal protein S13 OS=Acidithiobacillus fer... [more]
RS13_MYCGA1.365e-1151.4730S ribosomal protein S13 OS=Mycoplasma gallisepti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-E03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674866 ID=EY674866; Name=EY674866; organism=Citrus sinensis; type=EST; length=1012bp
CGAGAAAACAAACCCTTTAAAAGAGAAAATGGTACAAACACTTGCAATGC
CTGTCGCTCCGGCGCTCTCCGTTATCTGCAACGGACATAACAATAATCTT
CTCACCAACGCTTCCCTGTCTTTCCCTGTTTCCAAGCAGCCTCAGTATCC
CGGTCTGAGCATTCAATGTGCTCGTGTTGGAGGTGTCGAGATTCCAAACA
ACAAGCGGATTGAGTACTCGCTTCAGTATATTCATGGAGTTGGGCGCACA
AGAGCTCGCCTAATCCTCGTTGATCTCAAAATGGAGAACAAAATCACCAA
AGACATGTCTGAGGAAGAGCTCATTACAATTCGAGACGAAGTCTCCAAAT
ACATGATTGAAGGAAAAATTGAGGCGGTTCAATGCACTTGCTAATAGGAG
ATTGAAGGAAATTAAATGCTACCGCGGAAATCGCCAAATTCTGGGCTATG
CCTGGTAAAAGGCAACACCATATAAAAAATTGTCTCATATTAAAAGGATA
AAAAGGGTTGTAATTGGATGGTAAAAAGAAAGACCCCATCGTTAATATAA
AGATATTTTTCTCCGGGTTTATTTAATGGGAAAAGGGGTAAATTTTTAAA
AGGGATTAGATTTAAGAAGGTGGAAACCATTTGGGAACAGAAAGGCTTAG
GATAACATTTCAATTTCATACGGGAAGCTTTTTGATGGTCAGTGCTAATA
ATACTATGTATATCATAAACATAATTGATATTAAATAATATTATATACAG
ATGAAAAAAAAAAGATAGAAAATAAAGAAAAATATAAAATAAAGAAGAAA
GGGGGGGGCACGGCAGCCTAAAAAATAGACAAAACATAATTTAACAATTT
AAATATGACGACTGGCGCAAAACTTATATAACATTTACTATTAAAAAAAC
GGAAAAACACAAAGAAATAAAACAAGGAATAAAAAAATAATGAATACATG
CCTTAAAATTAATTACTGGAAAAACTGTAAGCAAGGAAGTGGAGCATAAA
ATAAAAACAACA
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