EY674864

Overview
NameEY674864
Unique NameEY674864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY674864_ssr474 microsatellite EY674864_ssr474:474..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.383e-39
Identity = 74/119 (62.18%), Postives = 97/119 (81.51%), Query Frame = 2
Query:   11 ELPFCCRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFEN--GLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGDIMEVI 361
            +LP   RDTLE+YS E++S+A  LI KM + L IK EE++  F++   +Q MRMNYYPPCPQP++V+GLTPHSD   LT+L+Q+N+VEGLQIKKDG W+PV PLPNAFIVN+GD++E+I
Sbjct:  162 KLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEII 280          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.280e-19
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   47 YSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGD 346
            Y  E+K L++ ++  +   L ++    + FF +   +MR NYYPPCP+PE+ +G  PH D  ALTILLQ ++V GL++  DG W PV+P+P A ++N+GD
Sbjct:  192 YCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGD 290          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.280e-19
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   47 YSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGD 346
            Y  E+K L++ ++  +   L ++    + FF +   +MR NYYPPCP+PE+ +G  PH D  ALTILLQ ++V GL++  DG W PV+P+P A ++N+GD
Sbjct:  192 YCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGD 290          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.299e-18
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 2
Query:   11 ELPFCCRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGDIMEVI 361
            +LP  C + +  YS E+  L   L   + + L +    +K+       ++  +YYPPCPQP+  +GLT HSD   LTILLQ + + GLQ+  D  W+ V P+P A +VNVGD++++I
Sbjct:  169 DLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQ-DHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLI 284          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.251e-17
Identity = 47/119 (39.50%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   17 PFCCRDTLEVYSMELKSLAMNLILKMGKVLNIKDE----EMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGDIMEVI 361
            P   R+T+E YSMEL+ +AM L   M K L ++ E     ++  F    +++     P      + +GL+PHSD   LT+L+Q+NEV GL IKKD  W+P+ P+  AF+VN+GD++E++
Sbjct:  162 PTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNREDELL-----PSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIM 275          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.753e-17
Identity = 43/117 (36.75%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   26 CRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVM-----RMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGDIMEVI 361
            CR T++ +++EL++LA  L+  + + L ++   +K  F  G   +     +++ YPPCP+PE + GL  H+D   + +L Q ++V GLQ+ KDG WI V P+ ++ +VN+GD +EVI
Sbjct:  112 CRSTMKEFALELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVI 228          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.383e-16
Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   11 ELPFCCRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRM--NYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGDIMEVI 361
            +LP  CRD +  YS ++  L   L   + + L +    +K+     L+ +RM  +Y+PPCP+P+   G + HSDG  LT+LL  N +EGLQ+ ++G W  V  +P A I+N+GD++++I
Sbjct:  172 DLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDM--ECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDN-IEGLQVCREGYWFDVPHVPGALIINIGDLLQLI 287          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.359e-16
Identity = 39/117 (33.33%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   11 ELPFCCRDTLEVYSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGDIMEVI 361
            +LP  CRD +  YS ++ +L   L   + + L ++   + +   +   +M  +YYPPCP+P+  +G + HSD   LT+LL  +++EGLQ++++G W  V  +  A I+N+GD++++I
Sbjct:  172 DLPEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLP-DQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLI 287          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.024e-16
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:   47 YSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGD 346
            Y   + SL++ ++  +G  L +K +  + FFE    +MR+NYYPPC +P+  +G  PH D  +LTIL Q + V GLQ+  +  W  + P P AF+VN+GD
Sbjct:  190 YCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQ-DHVNGLQVFVENQWRSIRPNPKAFVVNIGD 288          
BLAST of EY674864 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.255e-16
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:   47 YSMELKSLAMNLILKMGKVLNIKDEEMKNFFENGLQVMRMNYYPPCPQPEKVVGLTPHSDGPALTILLQINEVEGLQIKKDGVWIPVTPLPNAFIVNVGD 346
            Y+  + +L++ ++  +G  L ++    K FFE+   + R+NYYP C QPE  +G  PH D  +LTIL Q ++V GLQ+  D  W  + P P+AF+VN+GD
Sbjct:  189 YAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQ-DQVGGLQVFVDNKWQSIPPNPHAFVVNIGD 287          
The following BLAST results are available for this feature:
BLAST of EY674864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SRG1_ARATH3.383e-3962.18Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
GAOX2_ORYSJ2.280e-1943.00Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.280e-1943.00Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCH1_ARATH4.299e-1838.461-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
NCS1_COPJA1.251e-1739.50S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO1_DORSP4.753e-1736.751-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCH2_ARATH1.383e-1636.971-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_ARATH2.359e-1633.331-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX1_ARATH4.024e-1640.00Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAOX3_ARATH5.255e-1640.00Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-E01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674864 ID=EY674864; Name=EY674864; organism=Citrus sinensis; type=EST; length=996bp
CCACGCGTCCGAACTTCCTTTTTGTTGTAGAGACACCTTGGAAGTTTACT
CGATGGAGTTAAAATCTCTAGCCATGAATCTGATATTGAAAATGGGAAAA
GTTTTAAACATCAAAGACGAAGAAATGAAAAACTTCTTTGAAAATGGACT
GCAAGTAATGAGGATGAACTATTACCCTCCATGTCCTCAGCCTGAGAAGG
TTGTGGGTCTTACGCCTCATTCTGATGGCCCTGCTCTTACCATTCTGCTA
CAGATCAATGAAGTAGAAGGTCTCCAGATAAAGAAAGATGGAGTGTGGAT
TCCTGTTACTCCCCTCCCAAATGCTTTCATCGTTAACGTTGGAGACATTA
TGGAGGTAATAATTATTGTAAATTAGCTTAACTTGGCATTAACATCAGAA
TACAGGTTGGATTTCTGTTTCAGCCTTTAACTGGCCCTCTAGGAGACTAG
TATTGACTCCTCATTTTTCTTAGATTTATTTATTTACAAAGCTTATACAG
TTAATGAAGAAAATATTGCTTTAGTAACCTTTTGGAACATATCAACTGAA
ACTCATGTAAAAACTATAGAAGCTACTGAACAACTTCAACTTTTTTTTGG
AGCTCTGCTTTTTTTTATTGGTTCCTGAAATGCCCCCGAAAAATGGTGCC
AATTGTGGGAAAAAAACCGAATCCCTTTTGAAAATCCAACTTTTAAAAAT
TTTTTTTTGGTAATAAAAATTGAAAAATTTCAGTTATGACTTAACCCAAT
GGGGGCTTTAAAAAATTTTACTTGGGCCAAAATAATAACCCAATGGGGAA
AAAACCCCGAATAATTGTGGCATTCTGGGTACACGGTTAATTTCTGTTAA
CAAAAAAAAAATCCCTCGGTTGGGCCAACTTTTTTTCTCACACCCAAAAA
TAATGTGGGGGGAAAGACCCCACCCCCCCCCCTCCCCCATTTTTTGTTTT
TCCCTAAAAAAAAACCCACCCCGCCGTTTGTTGTTTTTATAAAAAA
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