EY674863

Overview
NameEY674863
Unique NameEY674863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length987
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY674863_ssr574 microsatellite EY674863_ssr574:574..585. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY674863 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.789e-16
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  232 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG----DEASDKSKSKVNDEDE 489
            SAFFVF+E+FRKT+K+++PN                 ++ AEKAP+ SKAEK K EY K + AYNKKQ      +E SDKS+S+VND+DE
Sbjct:   41 SAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDE 130          
BLAST of EY674863 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.206e-16
Identity = 60/164 (36.59%), Postives = 78/164 (47.56%), Query Frame = 1
Query:   55 MKGANRKGAARVSQE-ALKPND-RKVGKRKAATAKLDSGSXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNK--------------KQDGDEASDKSKSKVNDEDETSG 498
            MKGA  KGAA+   + A+K     K  K +   A  D                        SAFFVF+EEFRK FK++NP                 S+S ++KAPY +KA KLK EY K + AYNK              +++ +E SDKSKS+VNDED+  G
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAP----------------SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEEG 148          
BLAST of EY674863 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.800e-16
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  232 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQ------DGDEASDKSKSKVNDEDE 489
            SAFFVF+EEFRK F KE+P                 +MS AEKAPY +K+EK K EY K M AYNKKQ        +E S+KS S+VNDED+
Sbjct:   49 SAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDD 140          
BLAST of EY674863 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.756e-15
Identity = 56/168 (33.33%), Postives = 76/168 (45.24%), Query Frame = 1
Query:   55 MKGANRKGAARVSQEAL---KPNDRKVGKRKAATAKLDSGSXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNK-----------------KQDGDEASDKSKSKVNDEDETSG 498
            MKGA  KGAA+   +     K  ++   K K   A  D                        SAFFVF+ EFR+ FK++NP                 S+S +EKAPY +KA KLK EY K + AYNK                 +++ +E SDKSKS++ND+D+  G
Sbjct:    1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAP----------------SAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDDDDDEG 152          
BLAST of EY674863 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.675e-14
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  232 SAFFVFLEEFRKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNKK---QDGDEASDKSKSKVNDEDE 489
            SAFFVF+ +FR+ +KK++PN                S+S  EKAPY  +A K K EY   + AYNKK   +D +E SDKSKS+VNDEDE
Sbjct:   50 SAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEGSDKSKSEVNDEDE 138          
The following BLAST results are available for this feature:
BLAST of EY674863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI1.789e-1650.00HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
MNB1B_MAIZE5.206e-1636.59DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_SOYBN6.800e-1651.09HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_WHEAT5.756e-1533.33HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGL_VICFA1.675e-1448.31HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-D12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674863 ID=EY674863; Name=EY674863; organism=Citrus sinensis; type=EST; length=987bp
CCACGCGTCCGAGCAATTGCAGTTTGCCCCTGTAAAGAAAATTGTCTAGT
TACCATGAAGGGTGCGAACCGTAAAGGTGCAGCTAGAGTCTCACAGGAAG
CTTTGAAGCCAAATGACAGAAAGGTTGGGAAGCGGAAAGCTGCTACTGCT
AAGCTTGACAGTGGCAGTAAAAGGCAAGGAAAGAGGGAGAAGAAGGCCAA
GAAAGACCCAAATAAACCAAAGAGGCCTCCTAGTGCTTTTTTTGTCTTCC
TTGAGGAGTTCAGGAAAACCTTCAAGAAAGAGAATCCCAATGTAACTGCT
GTTTCAGCTGTTGGGAAAGCGGCAGGAGGGAAGTGGAAATCTATGTCTCC
TGCTGAAAAAGCTCCATATGAAAGCAAAGCAGAAAAACTGAAGTCTGAGT
ATGGAAAGAAAATGAATGCCTACAATAAAAAGCAGGACGGTGATGAGGCA
TCAGACAAGTCAAAGTCAAAAGTGAATGATGAAGATGAAACTAGTGGGGA
GGAAGAACATCAACTGGAGCCGGAGCCGGAGCCGGAACCGGAGCCCGAGC
CCGAACAAGAGCAGGATGAAGATGAAGAAGAAGAAGTGGAAAAAAATGAA
GAATAAGAAGAAAAATGAAGATGACTGGAAATCTGAATGAAAAAGGCCAA
GGGAAACAAGGAAAAAATTTTGGGATTTTGGAAAAATTAAACACCTTAAA
GGGTTTAAAATTTTGGGGGCTTTTGGAAAAAAAAAAAAAATAAAACGCAA
AGCCCTTTTTGAAAGACATCAAGAGCCTTTTTTTTTTTTTTGTGGTGAAA
TATTTCCCGCGGTTAGTTTTCCCCGAATTTTTAAAAAAATAAAAAAAAAA
AAAAAAAAAACAATAAAAAAAGGGGGGGGGGCCGCCAACATAAAAAGAAA
ACAAAAAAACATATAGGAAAATCAGCGGGAGGGGAGGGAGAAAAAATAAA
ATAATAACCCCCTCTTAACATAAGAAGGAGGGGCGCC
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