EY674849

Overview
NameEY674849
Unique NameEY674849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY674849_ssr448 microsatellite EY674849_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.177e-29
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  106 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            P+  AITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTN 112          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.538e-29
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  109 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            V +AITCGQVT+SLAPCI ++R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTN 110          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.474e-29
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  106 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            P T A++CGQV++SLAPCI +L  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTD
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTD 111          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.474e-29
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 1
Query:  121 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            ITCGQV++SLAPCI +LR GG   P  CC+GVRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTD
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTD 86          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.439e-27
Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  121 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            ITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTN 86          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.470e-27
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 1
Query:  109 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            V +AITC QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTN 110          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 7.143e-27
Identity = 55/87 (63.22%), Postives = 69/87 (79.31%), Query Frame = 1
Query:  121 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            ITCGQV++SLAPCI ++R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTN 86          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.715e-26
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  106 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            P+  A+TCGQV+++LAPCI ++R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTN 112          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.760e-25
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query:  121 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            ITCGQV+++LAPCI +++ GG  PP  CC+G+R++N  ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTN 86          
BLAST of EY674849 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.001e-25
Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  106 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTD 381
            P   AITCGQVT++LAPC+ +LR  G  P   CC GV++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTD
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTD 109          
The following BLAST results are available for this feature:
BLAST of EY674849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_PRUDU1.177e-2961.96Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO1.538e-2964.84Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN4.474e-2965.22Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI4.474e-2968.97Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUPE1.439e-2763.22Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PYRCO5.470e-2758.24Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR7.143e-2763.22Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV2.715e-2655.43Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUDO1.760e-2559.77Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_TOBAC3.001e-2563.04Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-C10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674849 ID=EY674849; Name=EY674849; organism=Citrus sinensis; type=EST; length=1051bp
CCACGCGTCCGCTAGCTATAACCAAGCACATTTCCTCCCTGAAGGATCCT
CATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGA
CTGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTG
GCTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCC
ATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTG
ACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGC
GGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAG
AATTCCTTACAAGATCAGCCCCAGCACCGACTGGCTCTAGGGTCAGGTGA
AGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAAT
AAATAAATAAAGAATAATCTATGTTAATTTCTTTTGTCCGAACGAGTCTC
CACTTGTATGAGTTTCACTCTCATGTCATGGTTTGTATATTTGCTTTTTA
TGTCATATTAAAAATAAGGTAAACGCCAATCTGTGTTTTAAGTGATTAAT
TTATTATTTATTTTTTGGGGTTATTAAAAAAAAAAAAAGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAGGGGGGGGCCGCCC
TCTTTAAAGGAATCCAAAGCTTTAAATTAACCCAGGGATTGAGAAGTTCA
AAACCCTCTTTTTTTTAGGGGCCCCCAAAATTTTAAATTTTCCTGGGCCG
CTCTTTTTAAAAACCTTCGGGGGAGGGGGAAAAAACCCTGGGGCTTAACC
CCAAATTTTAAATCCCTCCTGGGGAACAACATCCCCCCCTTTTCTTCCCC
AACGGGGAAGAATAAATAAAAAAAAAAAAGCGCCCCCCCGCACCAGATAA
TCCCCCCTTTTCCCCCAAAAAATATTTGCGCCCCACCACAACTAATGAGA
AAGGGGGGGAAAAAAGGGGGGAGAACAACCCACCCCGCCCCCTCTGTTAA
C
back to top