EY674832

Overview
NameEY674832
Unique NameEY674832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length982
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY674832_ssr732 microsatellite EY674832_ssr732:732..743. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 5.619e-76
Identity = 116/152 (76.32%), Postives = 133/152 (87.50%), Query Frame = 1
Query:   28 ISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAF 155          

HSP 2 Score: 48.521 bits (114), Expect = 5.619e-76
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPGV 559
            F+R+IGFDN RQVQCISF+ A PPGV
Sbjct:  155 FIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 8.738e-74
Identity = 120/157 (76.43%), Postives = 134/157 (85.35%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M  SMISS TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR   IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAF 157          

HSP 2 Score: 47.3654 bits (111), Expect = 8.738e-74
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPGV 559
            F+RIIGFDNKRQVQ ISF+A  PPGV
Sbjct:  157 FIRIIGFDNKRQVQIISFIAYKPPGV 182          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 3.297e-73
Identity = 119/156 (76.28%), Postives = 136/156 (87.18%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHS 480
            M SSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+  GWIPCLEFELE  +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTS 156          

HSP 2 Score: 45.0542 bits (105), Expect = 3.297e-73
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  485 VRIIGFDNKRQVQCISFLAANPP 553
            +RIIGFDNKRQVQCISF+A  PP
Sbjct:  158 IRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.244e-72
Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 1
Query:   13 MPSSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSF 158          

HSP 2 Score: 43.8986 bits (102), Expect = 1.244e-72
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            F+RIIGFDN RQVQCISF+A  P G
Sbjct:  158 FIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.623e-72
Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 1
Query:   22 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            ++ISS  V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSF 155          

HSP 2 Score: 41.9726 bits (97), Expect = 1.623e-72
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANP 550
            F+RIIGFDN RQVQCISF+A  P
Sbjct:  155 FIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 3.599e-72
Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 1
Query:   13 MPSSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR  W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSF 158          

HSP 2 Score: 43.8986 bits (102), Expect = 3.599e-72
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            F+RIIGFDN RQVQCISF+A  P G
Sbjct:  158 FIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 3.012e-71
Identity = 114/157 (72.61%), Postives = 130/157 (82.80%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSM+S+ TVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPCLEFELE G VYREH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  +
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGY 157          

HSP 2 Score: 45.4394 bits (106), Expect = 3.012e-71
Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            + RIIGFDN RQVQCISFLA  PPG
Sbjct:  157 YARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 8.712e-71
Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSM+S+  VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  +
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCY 157          

HSP 2 Score: 41.2022 bits (95), Expect = 8.712e-71
Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = 2
Query:  488 RIIGFDNKRQVQCISFLAANPPG 556
            RIIGFDN RQVQCISFLA  P G
Sbjct:  159 RIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 2.521e-70
Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SSM+SS  V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAF 153          

HSP 2 Score: 45.0542 bits (105), Expect = 2.521e-70
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPP 553
            F+RIIGFDN RQVQCISF+A  PP
Sbjct:  153 FIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 5.591e-70
Identity = 114/158 (72.15%), Postives = 137/158 (86.71%), Query Frame = 1
Query:   13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483
            M SS++SS  VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAW 156          

HSP 2 Score: 41.9726 bits (97), Expect = 5.591e-70
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:  482 FVRIIGFDNKRQVQCISFLAANPPG 556
            ++RIIGFDN RQVQCISF+A  P G
Sbjct:  156 WIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of EY674832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS_LACSA5.619e-7676.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE8.738e-7476.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR3.297e-7376.28Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.244e-7276.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.623e-7274.03Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP3.599e-7276.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES3.012e-7172.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR8.712e-7173.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH2.521e-7073.89Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3_SOLTU5.591e-7072.15Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-B03-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674832 ID=EY674832; Name=EY674832; organism=Citrus sinensis; type=EST; length=982bp
GAGCAAGTACCAATGCCTTCCTCAATGATCTCATCGACCACCGTTGCCAC
CGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTTCGTCCGAATTATCGGAT
TTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAACCCA
CCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGGCAATTG
GTTGAATATATTATGGGAAACCCCCATAATGATCATTCAAATTAAGGGGG
GGTCCGGTTGGGGTTTAATTTGGAACTAAGGCGGCCGGTTGGCGCTGCCC
CAACTTTTTAAGAAAAAAGTATAAGAGGAAAAAATAAATAAATAGAGGAT
ATGAATAAGCAAAAAAAAAATAAAATAAGGGGGGGGGCCCCCCTCAAAGA
AATCAAACGCAAAAAAACCCCGGGGCGGGGCGACAGCTAAAACCCCTTTT
TATAAAGTGGGCCCCCAAAAATATAAATTTTCAGGGGGGGCCGGCTTTTT
TTAAAAACACTGGGGGGGGGGGGGGGGAAAAAAAACCGGGGGGGTATTCC
CCCACACAATTAATACACCTCCCTGATGGCAC
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