EY674832
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 5.619e-76 Identity = 116/152 (76.32%), Postives = 133/152 (87.50%), Query Frame = 1 Query: 28 ISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 ISS+ +AT NR + QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI YL+R+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F Sbjct: 4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAF 155 HSP 2 Score: 48.521 bits (114), Expect = 5.619e-76 Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPPGV 559 F+R+IGFDN RQVQCISF+ A PPGV Sbjct: 155 FIRVIGFDNIRQVQCISFIVAKPPGV 180
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 8.738e-74 Identity = 120/157 (76.43%), Postives = 134/157 (85.35%), Query Frame = 1 Query: 13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SMISS TVA +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR IPCLEFELE G+VYREH+ SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F Sbjct: 1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAF 157 HSP 2 Score: 47.3654 bits (111), Expect = 8.738e-74 Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPPGV 559 F+RIIGFDNKRQVQ ISF+A PPGV Sbjct: 157 FIRIIGFDNKRQVQIISFIAYKPPGV 182
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 3.297e-73 Identity = 119/156 (76.28%), Postives = 136/156 (87.18%), Query Frame = 1 Query: 13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHS 480 M SSMISS TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YL+ GWIPCLEFELE +VYRE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E K YP S Sbjct: 1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTS 156 HSP 2 Score: 45.0542 bits (105), Expect = 3.297e-73 Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 2 Query: 485 VRIIGFDNKRQVQCISFLAANPP 553 +RIIGFDNKRQVQCISF+A PP Sbjct: 158 IRIIGFDNKRQVQCISFIAYKPP 180
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 1.244e-72 Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 1 Query: 13 MPSSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SSMISS TVAT A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSF 158 HSP 2 Score: 43.8986 bits (102), Expect = 1.244e-72 Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPPG 556 F+RIIGFDN RQVQCISF+A P G Sbjct: 158 FIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 1.623e-72 Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 1 Query: 22 SMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 ++ISS V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YL+R GWIPCLEFELEKG+VYRE+H SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF Sbjct: 2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSF 155 HSP 2 Score: 41.9726 bits (97), Expect = 1.623e-72 Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANP 550 F+RIIGFDN RQVQCISF+A P Sbjct: 155 FIRIIGFDNVRQVQCISFIAHTP 177
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 3.599e-72 Identity = 122/159 (76.73%), Postives = 137/159 (86.16%), Query Frame = 1 Query: 13 MPSSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SSMISS TVAT A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE+ YLLR W+PCLEFELE G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF Sbjct: 1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSF 158 HSP 2 Score: 43.8986 bits (102), Expect = 3.599e-72 Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPPG 556 F+RIIGFDN RQVQCISF+A P G Sbjct: 158 FIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 3.012e-71 Identity = 114/157 (72.61%), Postives = 130/157 (82.80%), Query Frame = 1 Query: 13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SSM+S+ TVA+ NR S AQA+MVAPFTGLKS+ FP T+KTN+DITSI SNGG+VQCMKVWP G+KKFETLSYLPPL+ E L E+ YLLRSGWIPCLEFELE G VYREH PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P + Sbjct: 1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGY 157 HSP 2 Score: 45.4394 bits (106), Expect = 3.012e-71 Identity = 20/25 (80.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPPG 556 + RIIGFDN RQVQCISFLA PPG Sbjct: 157 YARIIGFDNVRQVQCISFLAYKPPG 181
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 8.712e-71 Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 1 Query: 13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SSM+S+ VA NRAS AQASMVAPFTGLKS+SAFP T+KT DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YLLR GW+PCLEFELE G VYRE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP + Sbjct: 1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCY 157 HSP 2 Score: 41.2022 bits (95), Expect = 8.712e-71 Identity = 19/23 (82.61%), Postives = 19/23 (82.61%), Query Frame = 2 Query: 488 RIIGFDNKRQVQCISFLAANPPG 556 RIIGFDN RQVQCISFLA P G Sbjct: 159 RIIGFDNVRQVQCISFLAYKPKG 181
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 243.047 bits (619), Expect = 2.521e-70 Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 1 Query: 13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SSM+SS V T S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD L KE+ YLLR+ WIPC+EFELE G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F Sbjct: 1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAF 153 HSP 2 Score: 45.0542 bits (105), Expect = 2.521e-70 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPP 553 F+RIIGFDN RQVQCISF+A PP Sbjct: 153 FIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of EY674832 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 5.591e-70 Identity = 114/158 (72.15%), Postives = 137/158 (86.71%), Query Frame = 1 Query: 13 MPSSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSF 483 M SS++SS VAT R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ YLL++GW+PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++ Sbjct: 1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAW 156 HSP 2 Score: 41.9726 bits (97), Expect = 5.591e-70 Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 482 FVRIIGFDNKRQVQCISFLAANPPG 556 ++RIIGFDN RQVQCISF+A P G Sbjct: 156 WIRIIGFDNVRQVQCISFIAYKPEG 180 The following BLAST results are available for this feature:
BLAST of EY674832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 117
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Sequences
The
following sequences are available for this feature:
EST sequence >EY674832 ID=EY674832; Name=EY674832; organism=Citrus sinensis; type=EST; length=982bpback to top |