EY674831

Overview
NameEY674831
Unique NameEY674831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.654e-26
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M  PVD+  +   W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  448 GVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.260e-25
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M   VD+N     W QDKW G F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  469 GVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.260e-25
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M   VD+N     W QDKW G F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  469 GVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.260e-25
Identity = 55/97 (56.70%), Postives = 66/97 (68.04%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M   VD+N     W QDKW G F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  470 GVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 566
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.260e-25
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M  PVD+  +   W QDKW G F V+W  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  448 GVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE 544
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 8.165e-25
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M   VD+N     W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  475 GVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 8.165e-25
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M   VD+N     W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  475 GVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
[Close]
BLAST of EY674831 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 8.165e-25
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:    5 GLAHMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 295
            G+A M   VD+N     W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  475 GVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
The following BLAST results are available for this feature:
BLAST of EY674831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD1_MOUSE5.654e-2655.67YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD2_MACFA1.260e-2556.70YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN1.260e-2556.70YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN1.260e-2556.70YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_HUMAN1.260e-2554.64YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YTHD3_PONAB8.165e-2555.67YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE8.165e-2555.67YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN8.165e-2555.67YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-B02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674831 ID=EY674831; Name=EY674831; organism=Citrus sinensis; type=EST; length=1002bp
TGTTGGCCTTGCGCATATGGCTGGACCGGTTGATTTTAACAAAAACGTGG
AGTACTGGCAACAAGACAAATGGACTGGCTGTTTTCCGGTGAAGTGGCAC
ATTGTCAAGGATGTACCAAATAGTTTGTTGAAGCACATTACTCTCGAGAA
TAATGAGAACAAGCCTGTCACTAACAGTAGGGACACTCAAGAGATCAAGT
TAGAGCAGGGACTTAAATTGATCAAAATATTCAAGGATCACCCAAGTAAA
ACGTGCATTCTGGATGATTTTGGGTTTTATGAGACTCGCCAGAAAACCAT
TCAGGAAAAGAAGGCTAAACAACAGCAGTTCCAGAAACAGGTATGGGAAG
GAAAGCCTGCTGAGGAGAAGAAAGAATTGGCTAATGGGGAACTAAAGACA
CAGAAGTCATCGGAGGTTGCCTCTGATTTGGTCGAAGAGCGTACTACAAC
AGTTCAGAGTAATGGGGACCTAAGACTCTCTGAGAATGGATCAGTTGCAA
AAACTGGAGATGCCCCCAAGGGAAGTAACCCAGTTGTAGTTTCAGAGAAG
GTTATATTGGCAAATGGGGTTGCAAATGGTTGTTAGGCTTACCTGCACAG
GAAGGCGGTCTGATTTTATTGGAACTCTTTGGGAAGAGTTCTGTCAAAAG
TTTTGCTGGTTTTCAGAAATCCCTAAAAAAAACTTCCGGGCCATTTCTTT
TTTATGACTCCAGGCCCCCCTTATTTGGAATCCGGCCCCGGCTGCTTTTA
AAATCCAAAAATTTTCTTTGGGGGGAGGGGGATTTCCTTTGTTGGGGATT
TTCAAAAAAAGGGGGGGGGCAGGGGCGTAGGGTGTTTAAAAAAAACCCCA
AAAATAAAAATTGGCCCCACCTCCCTTTTTTTGGGAGGGGGGCCCCTTTT
TTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTCTCCTTTTTTTTTTGT
TTTTTTTCCCTCCCTCTCTCTCCAAACAAAAAAAGAAAAGATTTTGTTTT
TT
back to top