EY674829

Overview
NameEY674829
Unique NameEY674829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.983e-46
Identity = 101/174 (58.05%), Postives = 120/174 (68.97%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV*AYGV 603
            MATSAI+QSAFAG+TAL+  +E VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFA+NREL+V H +     +     P   +  ++ V+    V  W      I   G    + NPN    Q+IL +WA QV   G+
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP--EILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGL 170          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.383e-46
Identity = 102/169 (60.36%), Postives = 116/169 (68.64%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MATSAIQQSAFAG+TAL+  +E VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFA+NREL+V H +     +     P   +  ++ V     V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP--EILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQV 165          

HSP 2 Score: 79.337 bits (194), Expect = 3.414e-14
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  386 LITSKWAMLVALGCIFPEILSKNGVKFGKTDWFKDGA*IFSEGGIDYLWQTPTSIKIKTFWKSGLARYELMGLDERIKKWWQPALGERTELISHLGVTYEP 688
            +I  +WAML ALGC+FPEILSKNGV FG+  WFK G+ IFSEGG+DYL   P  I  ++      A+  LMG  E  +    P LGE  + I + G  ++P
Sbjct:   99 VIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYL-GNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-LGEGLDKI-YPGGAFDP 196          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 5.770e-46
Identity = 100/169 (59.17%), Postives = 117/169 (69.23%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MATSAIQQSAFAG+TAL+ S+E V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADP+TFAKNREL+V H +     +     P   +  ++ V+    V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP--EILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.285e-45
Identity = 100/169 (59.17%), Postives = 114/169 (67.46%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MATSAIQQSAF G+T LR  +EF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADP+TFA+NREL+V H +     +     P   L E++ V+    V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFP--ELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQV 165          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.679e-45
Identity = 101/169 (59.76%), Postives = 118/169 (69.82%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MATS IQQSAFAG+T L+  +E VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFAKNREL+V H +     +     P   L  ++ V+    V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP--ELLAKNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQV 164          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.856e-44
Identity = 101/174 (58.05%), Postives = 117/174 (67.24%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV*AYGV 603
            MA SAIQ SAFAG+TAL+   E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFAKNREL+V H +     +     P   L  ++ V+    V  W      I   G    + NPN    Q+IL IWA QV   G+
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFP--ELLSKNGVQFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGL 169          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.571e-43
Identity = 98/169 (57.99%), Postives = 113/169 (66.86%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MAT AIQQSAF G+   +  +EF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFA+NREL+V H +     +     P   +  ++ V+    V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP--EILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQV 165          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.070e-40
Identity = 96/169 (56.80%), Postives = 111/169 (65.68%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MA SA+ Q+     TA R   E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFA+NREL+V H +     +     P   +  ++ V+    V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MAASALHQTTSFLGTAPRRD-ELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP--EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 8.070e-40
Identity = 96/169 (56.80%), Postives = 111/169 (65.68%), Query Frame = 1
Query:   91 MATSAIQQSAFAGRTALRHSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV 588
            MA SA+ Q+     TA R   E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP+TFA+NREL+V H +     +     P   +  ++ V+    V  W      I   G    + NPN    Q+IL IWA QV
Sbjct:    1 MAASALHQTTSFLGTAPRRD-ELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP--EILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163          
BLAST of EY674829 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.923e-39
Identity = 97/176 (55.11%), Postives = 114/176 (64.77%), Query Frame = 1
Query:   91 MAT-SAIQQSAFAGRTALR-HSHEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPDTFAKNRELDVDHQQMGNACSSWLHLP*NPLQERSEVRQNRLVQGW---RINIL*RGNRLSMANPNFNQDQNILEIWARQV*AYGV 603
            MAT SAIQ S+ AG+T LR   +E V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +SADP+TFAKNREL+V H +     +     P   L  ++ ++    V  W      I   G      NPN    Q+IL IWA QV   G+
Sbjct:    1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFP--ELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGL 171          

HSP 2 Score: 76.2554 bits (186), Expect = 2.890e-13
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  386 LITSKWAMLVALGCIFPEILSKNGVKFGKTDWFKDGA*IFSEGGIDYLWQTPTSIKIKTFWKSGLARYELMGLDE 610
            +I  +WAML ALGC+FPE+L+KNG+KFG+  WFK GA IFSEGG+DY    P  I  ++       +  LMGL E
Sbjct:  100 VIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYA-GNPNLIHAQSILAIWACQVVLMGLIE 173          
The following BLAST results are available for this feature:
BLAST of EY674829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB23_TOBAC1.983e-4658.05Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB26_PETSP3.383e-4660.36Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_GOSHI5.770e-4659.17Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB215_PEA1.285e-4559.17Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB21_SILPR1.679e-4559.76Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI1.856e-4458.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC1.571e-4357.99Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_ORYSJ8.070e-4056.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI8.070e-4056.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH8.923e-3955.11Chlorophyll a-b binding protein type I, chloroplas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674829 ID=EY674829; Name=EY674829; organism=Citrus sinensis; type=EST; length=934bp
TGCGGAACCGCGGTACGGTCCGGATTCCCGGGGTCAACCACGCGTCCGAG
AAGCTTCGCCACCCCCTTTTTAAGCTTTCGCATAAGAAATATGGCAACCT
CTGCTATCCAACAATCAGCATTTGCTGGCCGGACCGCCTTGAGGCATTCA
CATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCAT
GAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAGACC
GCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACT
GGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCTGCAGA
CCCCGATACATTTGCTAAGAACCGTGAGCTAGATGTTGATCACCAGCAAA
TGGGCAATGCTTGTAGCTCTTGGCTGCATCTTCCCTGAAATCCTCTCCAA
GAACGGAGTGAAGTTCGGCAAAACAGATTGGTTCAAGGATGGCGCATAAA
TATTCTCTGAAGGGGGAATAGATTATCTATGGCAAACCCCAACTTCAATC
AAGATCAAAACATTTTGGAAATCTGGGCTCGCCAGGTATGAGCTTATGGG
GTTGGATGAAAGAATAAAAAAATGGTGGCAGCCCGCTCTGGGGGAAAGAA
CTGAACTCATATCACACCTGGGGGTGACTTATGAACCATATTGGATTGGC
CCAAGATACCCCGGTCAATTTTGCTGTGTTCGATGGGGGAGAGATACAAC
GAAGACTAGTTGAGGGGAGATAATCATAAGTGTGGTATTTTTTAGCTCTA
GATTTGAGAAGATGGGAAGAAGTATTTAAGATAGACCCCAATTAACCCAT
ATGTGCGCATATATGTGGTGATTTATATGACGTAAAATTAAACTACAAAA
ATAGTACACCACTGAGAAATAATAAAAACAATGA
back to top