EY674825

Overview
NameEY674825
Unique NameEY674825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY674825 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.386e-74
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 3
Query:    3 RPRGLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 446
            RPR L  RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGSE G RM+DE DLRKYLEKWDKTYWPTYKVLD+LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYK+V PGNP+EDLKLAVNTIGSLVRANALRREMDKL++
Sbjct:  317 RPRRLQDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSEMGKRMVDESDLRKYLEKWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of EY674825 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 2.213e-72
Identity = 132/148 (89.19%), Postives = 142/148 (95.95%), Query Frame = 3
Query:    3 RPRGLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 446
            RPR LS RVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+EGS+NG +MIDEGDLRKYLEKWDKTY PTY+VLDVLQKVFYRSNPAREAFVEMC DEYVQKMTFDSYLYKRV PG+PLED+KLAVNTIGSLVRANALRRE++KL++
Sbjct:  320 RPRRLSKRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSQNGKKMIDEGDLRKYLEKWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of EY674825 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.306e-68
Identity = 122/148 (82.43%), Postives = 139/148 (93.92%), Query Frame = 3
Query:    3 RPRGLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 446
            RP+ ++GRV LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI+ GS NGTRM++E DLR+YL ++D+ YWPTYKVLDVLQKVFYRSN AREAFVEMCAD+YVQ+MTFDSYLYKRVVPGNPL+D+KLAVNTIGSLVRA ALRREM+K+T+
Sbjct:  316 RPKRVAGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRRYLAEFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of EY674825 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.444e-47
Identity = 93/139 (66.91%), Postives = 110/139 (79.14%), Query Frame = 3
Query:    3 RPRGLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANAL 419
            RPR + GRVALVGDAAG VTK SGEGIYFAAKS RMCAE I+  S NG R+  E DL++Y+++WDK Y  TY VLD+LQ+VFYR++  REAFVEMC+D  VQK+TFDSYLYK VVP NPL  +K+   TIGSL+R NAL
Sbjct:  267 RPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAETIVATSNNGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
BLAST of EY674825 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.722e-16
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   27 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSL 401
            V L GDAAG V   SGEGIY+A   GR  AEA +   ++G       DL+     + K +   +KVL ++Q  +Y S+  RE FV +C D  VQ+MTF+SY+ K++    PL++LK+    +  L
Sbjct:  262 VVLSGDAAGVVAPSSGEGIYYAHAGGRYAAEAAMAFLKSGK----PADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382          
The following BLAST results are available for this feature:
BLAST of EY674825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_TOBAC1.386e-7490.54Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH2.213e-7289.19Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ3.306e-6882.43Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY31.444e-4766.91Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA1.722e-1639.20Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-002-A08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674825 ID=EY674825; Name=EY674825; organism=Citrus sinensis; type=EST; length=967bp
CCCGCCCGCGGGGGCTATCGGGGAGAGTGGCATTAGTCGGAGATGCAGCC
GGGTACGTCACGAAATGCTCTGGCGAAGGCATTTACTTTGCGGCAAAGAG
TGGAAGAATGTGTGCGGAGGCCATCATTGAAGGGTCAGAGAATGGAACCA
GGATGATCGATGAAGGGGACTTGAGGAAGTATTTGGAGAAGTGGGATAAG
ACTTACTGGCCAACTTATAAGGTACTGGATGTATTGCAGAAGGTGTTTTA
CCGATCGAATCCAGCGAGGGAAGCATTTGTGGAGATGTGTGCCGATGAGT
ATGTGCAGAAGATGACATTTGATAGCTATTTGTATAAAAGAGTGGTGCCC
GGAAACCCATTGGAGGATTTGAAGTTGGCTGTGAATACTATTGGGAGCTT
GGTGAGAGCTAATGCACTTAGGAGGGAGATGGATAAGCTGACCATCTGAA
TATAAGGAGAGGGAAAAAGAGTTTGATTCTTTTATTTATGTTTCTTTTGA
GCATGTTGTAAGAGAAAAAGATCAAACTTGATCCTATGGCTCCCCCCCAC
CCTTCAGTCTAATTATGTAAGAAAATATTTTTATGCATTTTATAATTAAT
TTGCATTNNNGNAAAGNGAAGAAAAAGAAAGAAGGAAAGGAGAAGAGAAA
AAGAAGAAAATGAAAAAAAAAAAAGGGGGGGGGGCCCCCCCAAAAGGAAC
CAAGCTTTACTTCCCCCGGGCGGGCCACCCCCCAAACCCTTCCTTAAGGG
GCCCCCAAATTTTAATTTTCCGGGGCCGCCGTTTTAAAAACCCCGGGGGG
GGGGAAAAACCCCGGGGTTTCCCCCAACTTTTAACCCCCCTGGCCCCACC
CCCCCCCCTTTTTCCCCCCCGGGGGGGGAAAAAAAAAAAAAAAAAGGCCC
CCCCCACCCTTTCTCCCCCTCCCCCCCCAAAAAATTTTGGGCCCCCCCCG
CGGGAAGGGGGGGGGAG
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