EY674815

Overview
NameEY674815
Unique NameEY674815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length950
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY674815 vs. ExPASy Swiss-Prot
Match: SOXC_RHOSG (Dibenzothiophene desulfurization enzyme C OS=Rhodococcus sp. (strain IGTS8) GN=soxC PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.502e-14
Identity = 45/144 (31.25%), Postives = 73/144 (50.69%), Query Frame = 1 
Query:   31 DSSIAHIFGFPHLMLATVRLFATPAQWQTWFSLTASNNWFWGNTLNPLDTRTV------VKRHTGWREFSGQKNFCSGANDSEMLIASAI---DESAGGKLLITAIPSARSGIILHNDWNNMGQRQTNSGSMTFKRVHMVKVRP 435
            D S+ H+FG+       + L  +  Q +  ++  A NNW+ GN  +  ++  +           G    +G K+FCSGA  S++L    +   D    G ++  AIP++R+G+  ++DW  +G RQT+SGS  F   H VKV P
Sbjct:   87 DGSLGHLFGYHLTNAPMIELIGSQEQEEHLYTQIAQNNWWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDF---HNVKVEP 227
The following BLAST results are available for this feature:
BLAST of EY674815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SOXC_RHOSG3.502e-1431.25Dibenzothiophene desulfurization enzyme C OS=Rhodo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-H02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674815 ID=EY674815; Name=EY674815; organism=Citrus sinensis; type=EST; length=950bp
TGCCGGGTACAGGATCGGGATTCCCGGGTCGACAGCTCCATCGCCCACAT
ATTCGGCTTTCCTCACCTGATGCTTGCCACCGTCCGGTTGTTCGCCACGC
CCGCACAATGGCAAACCTGGTTCAGCCTGACGGCCAGCAACAACTGGTTC
TGGGGTAACACCCTGAACCCGCTGGACACCCGCACGGTGGTCAAGCGCCA
CACGGGTTGGCGGGAATTCTCGGGACAGAAGAACTTCTGCTCCGGGGCCA
ACGACTCGGAGATGCTGATCGCCTCGGCCATCGATGAAAGCGCTGGCGGC
AAGTTGCTGATCACAGCGATTCCCAGCGCTCGCAGCGGGATCATCCTGCA
CAACGACTGGAACAACATGGGCCAACGCCAGACCAACAGCGGCAGCATGA
CTTTCAAACGCGTACACATGGTAAAAGTCCGACCTGCTGCTGGAACCCGG
GGCCGCTAAACAAACCGTATCGCATGCCCTGCACCCACTGATTGCGAAAC
TGCCACTCACAAAATAATTCCACGGGAATCCCCGAAGGGCGCAATCAAAA
AAACAACGCCAATATAACTTGGAAAGAAAGCCCGTCCAAGGGTTACTTTC
TTATTCATGCCAAAACAACCAAAAAACCCATTATTACAACAACAATAAGG
AAAAATATGAGTGGGGATAGAAAGCACCCTACCTGTAGTGTGGACAGCAC
ATAATAAGGATAATGTAACCGCTTGGGCAAATGTTCCAGCCCATTCACAA
CAAGAAACAAGATACAAAATATATATTTGCTTATCCACATCCCAAAAACA
ACAACATACCATTACGGGATGAAATTAAAAATATAAGAATTTAAAAAATA
AAAAAGGGTGGAGATAAAAAACAAATTTAAACATATAATTAATAAAAAGA
TAAATAGTAGCAACAATTATGTGGTGAAACTACTGAGAAATAAATATAAA
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