EY674812

Overview
NameEY674812
Unique NameEY674812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length154
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY674812 vs. ExPASy Swiss-Prot
Match: AROA_RHILW (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=aroA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 LTLDCMRASPAQVDIVDESTWRAAPTGYTAHDYLIEPDASAATYLWAAEVL 153
            LT   M+A  A+V+     TWR  PTGY A D+++EPDASAATYLWAAEVL
Sbjct:  205 LTTAAMKAFGAKVEKTSPVTWRVEPTGYRAADFIVEPDASAATYLWAAEVL 255
[Close]
BLAST of EY674812 vs. ExPASy Swiss-Prot
Match: AROA_RHIEC (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=aroA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 LTLDCMRASPAQVDIVDESTWRAAPTGYTAHDYLIEPDASAATYLWAAEVL 153
            LT   M+A  A+V+     TWR  PTGY A D++IEPDASAATYLWAAEVL
Sbjct:  205 LTTAAMKAFGAKVEKTSPVTWRVEPTGYRAADFVIEPDASAATYLWAAEVL 255
[Close]
BLAST of EY674812 vs. ExPASy Swiss-Prot
Match: AROA_RHIE6 (3-phosphoshikimate 1-carboxyvinyltransferase OS=Rhizobium etli (strain CIAT 652) GN=aroA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.811e-11
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 LTLDCMRASPAQVDIVDESTWRAAPTGYTAHDYLIEPDASAATYLWAAEVL 153
            LT   M+A  A+V+     TWR  PTGY A D++IEPDASAATYLWAAEVL
Sbjct:  205 LTTAAMKAFGARVEKTSPVTWRVEPTGYRAADFVIEPDASAATYLWAAEVL 255
The following BLAST results are available for this feature:
BLAST of EY674812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AROA_RHILW5.811e-1160.783-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_RHIEC5.811e-1162.753-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
AROA_RHIE65.811e-1162.753-phosphoshikimate 1-carboxyvinyltransferase OS=Rh... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-001-G10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY674812 ID=EY674812; Name=EY674812; organism=Citrus sinensis; type=EST; length=154bp
CTGACCCTGGACTGCATGCGCGCCTCCCCTGCCCAGGTGGACATCGTTGA
TGAAAGCACCTGGCGCGCGGCCCCGACCGGCTACACCGCCCACGATTACC
TGATCGAACCTGACGCTTCCGCCGCCACCTACTTGTGGGCTGCCGAAGTG
TTGA
back to top