FC922248

Overview
NameFC922248
Unique NameFC922248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC922248 vs. ExPASy Swiss-Prot
Match: SUC4_ARATH (Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 48/88 (54.55%), Postives = 54/88 (61.36%), Query Frame = -2 
Query:  351 ITYSVPYALVSIRTESXXXXXXXXXXXXXLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXIPRSSAQKPRALP 614
            ITYSVPYAL+SIR ES             LAIVIPQ++VS+GSGPWDQLFGGGNSPA AV               +PR+  QKP  LP
Sbjct:  423 ITYSVPYALISIRIESLGLGQGLSLGVLNLAIVIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKPIPLP 510
[Close]
BLAST of FC922248 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSJ (Sucrose transport protein 2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -2 
Query:  435 ITYSVPYALVSIRTESXXXXXXXXXXXXXLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 614
            ITYS+PYA+ + R E+             LAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV
Sbjct:  413 ITYSIPYAMAASRVENLGLGQGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAV 472
[Close]
BLAST of FC922248 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSI (Sucrose transport protein 2 OS=Oryza sativa subsp. indica GN=SUT2M PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -2 
Query:  435 ITYSVPYALVSIRTESXXXXXXXXXXXXXLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 614
            ITYS+PYA+ + R E+             LAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV
Sbjct:  413 ITYSIPYAMAASRVENLGLGQGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAV 472
The following BLAST results are available for this feature:
BLAST of FC922248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUC4_ARATH1.598e-1754.55Sucrose transport protein SUC4 OS=Arabidopsis thal... [more]
SUT2_ORYSJ8.207e-1460.00Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]
SUT2_ORYSI8.207e-1460.00Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM2AC07RM1 SLH Citrus sinensis cDNA clone KN0AAM2AC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922248 ID=FC922248; Name=FC922248; organism=Citrus sinensis; type=EST; length=615bp
TTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAGTGAAAATGAATTTCATC
AAAAAAATGTTGGACTCTTTTGGATAGCTCTCTCATGCAGTATTGAGTGG
CAATGATAATTAAATGTTACATTTAAGTTCCTATTATGGTTATGCACATA
TGTTGCTTGTTTCTCTTTGTCCACAAGCGCCACTGTTGATAGAGTCCCTT
TGAGCCTATGACTTGATTCCCAAAAACTTTCTCACTGTTTCCAGTTTAAT
TTATTATTTGGCTATAGTGTTCTCAAAACTTCAAAAACTTCCAAGCAATT
CGATGCATTTAGACACTCACACATTTGGTAACCAAAGTAGGATCAGCTCA
TGGGAGGGCCCTGGGCTTCTGAGCGCTAGATCGAGGAATAGCTAATATTG
CTATGAGTCCACCAGCAAGGGCTGAAATTCCCCCAACAGCAAATGCTGGT
GAGTTTCCACCACCAAAGAGTTGATCCCATGGTCCGCTTCCCATGGAAAC
CACAATCTGTGGGATCACAATTGCCAGATTCAAAACACCCAATGATAAAC
CTTGGCCAAGTCCCAAAGACTCTGTGCGTATGGAAACCAAAGCATATGGA
ACACTGTAAGTTATC
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