EY655253

Overview
NameEY655253
Unique NameEY655253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY655253 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  147 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSXXXXXXXXXXXQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLERY 638
            LV  L  L N KE VYG L+ WVAWE  FP+ +            QWHRV+Q+ KWMLSKGQG+TMGT   L+ A DMD RA+EA   W   +     S+P +L   MIA+Y  +++ +++I++F  +E     P E S  +RVA A+  L   E ++ +L RY
Sbjct:  101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRY 263          
BLAST of EY655253 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25
Identity = 58/164 (35.37%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  147 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSXXXXXXXXXXXQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLERY 638
            ++  +  L N KE+VYG LD+++AWE  FP+             ++W +++QV KWMLSKGQG TMGT   L+ AL  D+R +EA + W K     L   P +    MI+IYY+ +M ++L ++F  +E    K P  +IV  V   +  L + ++ E+++++Y
Sbjct:   61 MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223          
The following BLAST results are available for this feature:
BLAST of EY655253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP322_ARATH2.337e-3042.07Pentatricopeptide repeat-containing protein At4g18... [more]
PP332_ARATH1.016e-2535.37Pentatricopeptide repeat-containing protein At4g21... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-072-E05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY655253 ID=EY655253; Name=EY655253; organism=Citrus sinensis; type=EST; length=640bp
CCACGCGTCCGATCCATTAATTTGCAACAATCATCCAGGGTCAACGCACC
AACCAATCCGTAGATCAGTATCCAGAGAGAAATGCTGCAAGTACACGGAA
TTTTCGAATTGGGGAGTATGTCCCGAGAAAGGATAAGATTAATTTCCTTG
TAAACACTCTTCTTGACCTCAAGAACAGTAAAGAAGATGTTTATGGCACT
CTTGATGCTTGGGTTGCATGGGAGCAAAACTTTCCTGTTGGATCACTTAA
GAAGGCATTGCTTGCTCTTGAGAAGGAACAACAGTGGCACAGAGTAGTTC
AGGTAATCAAATGGATGTTAAGCAAGGGGCAGGGATCTACAATGGGCACA
TGTGGACAATTAATACGGGCTTTAGATATGGACCACAGAGCAGAAGAAGC
ACACAAGTTTTGGGAGAAGAGAATTGGTATAGACCTCCACTCTGTCCCTT
GGCAATTATGCAAAAGCATGATCGCTATTTATTATCGAAACAATATGCTG
GAGAGGCTCATAAAGCTTTTCAAGGGTCTTGAAGCTTTTGATCGTAAACC
TCCAGAGAAATCAATAGTGCAGAGAGTTGCAGATGCATACGAAGTGTTGG
GCTTATTAGAAGAGAAAGAAAGGGTCTTGGAGAGGTACAA
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