EY680068

Overview
NameEY680068
Unique NameEY680068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680068_ssr417 microsatellite EY680068_ssr417:417..440. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY680068 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.808e-19
Identity = 68/184 (36.96%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   15 TRPNSCTSVIQGLTGNVGSCSPLDNSSVAMKTETMQNFPSHSNGTPLNRQSNGSSNNNDMASTAKYVTLKPEALNDKSESISAFKP-FHSSAFQALQNSRSCSSQQVLPEKTDDMGPNSCQSQLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQDHDDLSSKAMAAAAPQCGSSNVFE 563
            TR ++  +  QG TG VGSCSP DN S AMKT++  N  S+S+  P+ + SNGSSNNNDM ST K V  KP    ++  S SA K   H+SAF   Q+  S  +     EKTD++  N+ +    G                                   H D+S +   + APQCGSSNVF+
Sbjct:  441 TRYHTPVASNQGGTGFVGSCSPHDNISEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHPAQHWTS-PANTTGKEKTDEVANNAAKRAQPGEVQSNLVQHPRPILHYV------------------HFDVSRENGGSGAPQCGSSNVFD 605          
BLAST of EY680068 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.172e-18
Identity = 67/184 (36.41%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   15 TRPNSCTSVIQGLTGNVGSCSPLDNSSVAMKTETMQNFPSHSNGTPLNRQSNGSSNNNDMASTAKYVTLKPEALNDKSESISAFKP-FHSSAFQALQNSRSCSSQQVLPEKTDDMGPNSCQSQLRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQDHDDLSSKAMAAAAPQCGSSNVFE 563
            TR ++  +  QG TG +GSCS  DNSS AMKT++  N  S+S+  P+ + SNGSSNNNDM ST K V  KP    ++  S SA K   H+SAF   Q+  S  +     EKTD++  N+ +    G                                   H D+S +   + APQCGSSNVF+
Sbjct:  441 TRYHTPVASNQGGTGFMGSCSLHDNSSEAMKTDSAYNMKSNSDAAPIKQGSNGSSNNNDMGSTTKNVVTKPSTNKERVMSPSAVKANGHTSAFHPAQHWTS-PANTTGKEKTDEVANNAAKRAQPGEVQSNLVQHPRPILHYV------------------HFDVSRENGGSGAPQCGSSNVFD 605          
BLAST of EY680068 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   15 TRPNSCTSVIQGLTGNVGSCSPLDNSSVAMKTETMQNFPSHSNGTPLNRQSNGSSNNNDMASTAKYVTLKPEALNDKSESISAFKPF-HSSAFQALQNSRS 314
            TR ++  +  QG  G  GSCSP DNSS A+KT++     S+S+   + + SNGSSNNNDM S+ K    KP +   K  S SA K   H+SAF  +Q   S
Sbjct:  469 TRYHTTVASNQGGAGFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQRQTS 569          
BLAST of EY680068 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   15 TRPNSCTSVIQGLTGNVGSCSPLDNSSVAMKTETMQNFPSHSNGTPLNRQSNGSSNNNDMASTAKYVTLKPEALNDKSESISAFKPF-HSSAFQALQNSRS 314
            TR ++  +  QG  G  GSCSP DNSS A+KT++     S+S+   + + SNGSSNNNDM S+ K    KP +   K  S SA K   H+SAF  +Q   S
Sbjct:  469 TRYHTTVASNQGGAGFGGSCSPQDNSSEALKTDSNCKVKSNSDAAEIKQGSNGSSNNNDMGSSTKNAITKPSSNRGKVISPSAVKATQHTSAFHPVQRQTS 569          
The following BLAST results are available for this feature:
BLAST of EY680068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRR37_ORYSI1.808e-1936.96Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSJ1.172e-1836.41Two-component response regulator-like PRR37 OS=Ory... [more]
PRR73_ORYSJ3.651e-1243.56Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI3.651e-1243.56Two-component response regulator-like PRR73 OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680068 ID=EY680068; Name=EY680068; organism=Citrus sinensis; type=EST; length=857bp
CCACGCGTCCGCCCACGCGTCCGAATAGTTGTACCTCTGTCATCCAGGGT
CTCACTGGGAATGTAGGAAGCTGTTCTCCTCTAGATAACAGCTCTGTGGC
AATGAAGACAGAAACAATGCAAAATTTTCCATCTCATTCGAATGGCACTC
CTCTCAATCGGCAGTCTAATGGGAGCAGCAACAACAACGACATGGCCTCC
ACTGCTAAATATGTTACCCTCAAGCCCGAAGCTTTAAACGATAAGTCAGA
GTCAATATCAGCATTCAAACCTTTTCACTCTTCTGCTTTCCAAGCTCTGC
AGAATAGCCGTAGTTGTTCATCTCAACAAGTGTTACCTGAAAAGACAGAT
GACATGGGACCTAACTCGTGTCAATCACAATTGAGAGGGTCACACCATTC
AGTTCAAGCAGAGAATCACCACCACCACCACCACCACCACCATCATTATC
ATCAGCATGGTCACAGCATGCATCTCCATCAGTCACCACAGGACCATGAT
GATCTCTCGTCCAAAGCTATGGCAGCTGCAGCTCCACAGTGTGGGTCATC
AAATGTTTTTGAGACCAACAATGATGGTGATGTTGGAAATTATGATGTGA
ATGGGCCTATCTGTTCCATCTTCAACCGCTTTTTACTGAAAAAACGGAAG
ACATGGGAATTAACTCAGGGTCATCCACAAATTGAAAGGGGCCCAACCTT
TCCAGTTCAAGGGGAAAAACCCCACCCCCACTACCCCCGTCCTTATCCTC
CCCGCGAACCCCACCATGCCAGCAATCCCCCCCAGGAATGGGGAAGAAGG
TCCCTTTTAAAAAAAAAGGGGAACCTGGCCGCCCCCCCGGGGGGGGGCAA
ACAAAAG
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