EY684953

Overview
NameEY684953
Unique NameEY684953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8113 contig Csv1_Contig8113:1..500. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
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BLAST of EY684953 vs. ExPASy Swiss-Prot
Match: TETX_BACFR (Tetracycline resistance protein from transposon Tn4351/Tn4400 OS=Bacteroides fragilis GN=tetX PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.214e-15
Identity = 56/158 (35.44%), Postives = 82/158 (51.90%), Query Frame = 1 
Query:   10 PALATLVGQGKLDVSGDARLLVVQRNANAHLRGYGI-FRVPTDWAAQ-QLDWSSPQATRQSLLAQFEGWHPDILALLHASNERFLSRAIYALPVGHHW-AHRP-GLTLIGDAAHLMSPFGGEGVNAAMLDAAELARHLIEN--STCSEAVRAYETQMF 465
            P    L    +L  S    LL    N N  L  +GI F+ P +W  Q Q+D+ +  +    LL +F  W      L+H +   F+  A    P+   W + RP  +T+IGDAAHLM PF G+GVN+ ++DA  L+ +L +   ++  EAV+ YE QMF
Sbjct:  203 PGFFQLCNGNRLMASHQGNLLFANPNNNGALH-FGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLS-FVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMF 358
The following BLAST results are available for this feature:
BLAST of EY684953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TETX_BACFR6.214e-1535.44Tetracycline resistance protein from transposon Tn... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-G03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684953 ID=EY684953; Name=EY684953; organism=Citrus sinensis; type=EST; length=500bp
CGCCGCCACCCGGCCCTGGCCACGCTCGTCGGCCAGGGCAAACTGGACGT
TTCGGGCGACGCCAGGTTGCTGGTCGTGCAACGCAACGCCAACGCGCATC
TGCGCGGCTATGGAATCTTTCGCGTCCCCACTGACTGGGCGGCGCAGCAA
CTGGACTGGTCTTCGCCACAGGCGACCCGGCAATCGCTGCTGGCGCAGTT
CGAAGGCTGGCACCCGGACATCCTCGCGCTGCTGCACGCCTCAAACGAGC
GCTTTCTGTCCCGGGCCATTTACGCGCTGCCCGTCGGGCATCACTGGGCA
CACCGCCCAGGCCTGACCCTGATTGGCGATGCCGCACATCTGATGTCACC
GTTTGGTGGCGAAGGCGTCAATGCGGCGATGCTCGATGCTGCGGAGCTGG
CCCGGCACCTGATCGAAAACAGCACATGCTCCGAGGCGGTAAGGGCCTAT
GAAACGCAGATGTTCGACCGCATAGAGCCGATCGCCCGTGACAGCGCCGA
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