EY680333

Overview
NameEY680333
Unique NameEY680333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.269e-49
Identity = 90/115 (78.26%), Postives = 103/115 (89.57%), Query Frame = 2
Query:  314 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            +L  AREAVNEVQVV DSSW+ LVI SE PVLV+FWAPWCGPCRMIAP I+ELAKEYAGK+ C+KLNTD+SPN ATKYGIRSIPTVLFFKNGE+K+S+IGAVPK+TL   +EKY+
Sbjct:   58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.454e-47
Identity = 97/185 (52.43%), Postives = 126/185 (68.11%), Query Frame = 2
Query:  116 MAMKNCFQVSSVYSTRAGVVQCY----QPFSSVKKIHLPISNGLNKXXXXXXXXXXXXXXXXXXXXXXXXILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            MA++NC Q+S+  S     V+ +    QP S   K+++P   GL +                        ++CKA EAV EVQ V DSSW+  V+ SE PV+V+FWAPWCGPC++IAP I+ELAKEY+GK+A +KLNTD++P IAT+Y IRSIPTVLFFKNGE+KESIIGAVPKSTL  ++EKY+
Sbjct:    1 MAIENCLQLSTSASVGTVAVKSHVHHLQPSS---KVNVPTFRGLKRSFPALSSSVSSSSPRQFRYSS---VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.098e-44
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 2
Query:  320 CKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            C+    V+EV V  + +W+++V+ SE PVLVEFWAPWCGPCRMIAP I+ELAKEY GK+ C K+NTDDSPNIAT YGIRSIPTVL FKNGEKKES+IGAVPK+TL + ++KYV
Sbjct:   58 CQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.964e-44
Identity = 77/114 (67.54%), Postives = 98/114 (85.96%), Query Frame = 2
Query:  317 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            +C+++ AV+EV V  + +W+ LV++ E PVLVEFWAPWCGPCRMIAP I+ELAK+YAGK+ C K+NTDDSPN+A+ YGIRSIPTVL FK GEKKES+IGAVPKSTL + ++KY+
Sbjct:   51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.952e-43
Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 2
Query:  317 LCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            +CK +  V+EV V  + +W+N+VI+ E+PVLVEFWAPWCGPCRMIAP I+ELAK+Y GK+ C K+NTDD PNIA+ YGIRSIPTVL FK+GEKKES+IGAVPK+TL + ++KY+
Sbjct:   60 VCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.455e-37
Identity = 63/115 (54.78%), Postives = 94/115 (81.74%), Query Frame = 2
Query:  314 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            ++C+A+E   ++QVV DS+W++LV+ +  PV+V+FWAPWCGPC+MI P + +LA+ Y GK+  +KLNTD+SPN   +YG+RSIPT++ F  GEKK++IIGAVPK+TL S+L+K++
Sbjct:   71 VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.241e-37
Identity = 63/116 (54.31%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  314 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYVE 661
            I+C+A++    + +V DS+WE+LV+ ++ PV+V+FWAPWCGPC+MI P + ELA++Y GK+  FKLNTDDSP    KYG+RSIPT++ F  GEKK++IIGAVPK+TL ++++K+++
Sbjct:   62 IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFLQ 177          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.743e-36
Identity = 68/118 (57.63%), Postives = 93/118 (78.81%), Query Frame = 2
Query:  314 ILCKARE---AVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            I C+A++   A  EV  ++DS W+  V+ S+ PVLVEFWAPWCGPCRMI P +++LAK++AGK   +K+NTD+SPN A +YGIRS+PTV+ FK GEKK+SIIGAVP+ TL  T+E+++
Sbjct:   74 IACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.033e-35
Identity = 64/105 (60.95%), Postives = 87/105 (82.86%), Query Frame = 2
Query:  344 EVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            E   V D +++N+V+ S  PVLV+FWAPWCGPCR+IAP ++E+A EY  K+ C KLNTD+SPN+A++YGIRSIPT++ FK G+K E+IIGAVPK+T+V T+EKY+
Sbjct:   35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of EY680333 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.568e-34
Identity = 59/115 (51.30%), Postives = 90/115 (78.26%), Query Frame = 2
Query:  314 ILCKAREAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLVSTLEKYV 658
            ++C+A++    + VV DS+W++LV+ ++ PV V+FWAPWCGPC+MI P + ELA++YAG+   +KLNTD+SP    +YG+RSIPT++ F NGEKK++IIGAV K TL +++ K++
Sbjct:   65 VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179          
The following BLAST results are available for this feature:
BLAST of EY680333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
TRXM_PEA1.269e-4978.26Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL3.454e-4752.43Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_ORYSJ6.098e-4469.91Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_MAIZE7.964e-4467.54Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT3.952e-4366.67Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM2_ARATH1.455e-3754.78Thioredoxin M-type 2, chloroplastic OS=Arabidopsis... [more]
TRXM_BRANA3.241e-3754.31Thioredoxin M-type, chloroplastic OS=Brassica napu... [more]
TRXM4_ARATH2.743e-3657.63Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
TRXM_CHLRE3.033e-3560.95Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXM1_ARATH2.568e-3451.30Thioredoxin M-type 1, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-H12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680333 ID=EY680333; Name=EY680333; organism=Citrus sinensis; type=EST; length=850bp
CAGTCATCGCCCAAAAGACCAAGGCCACATCTTCTTCTATACTCCTATCA
ATACTCTTTTAACTTGCTGTGAACAGACACATACCCAGCAAAAGAAAAAA
GAAAGACAGAGAAAAATGGCTATGAAGAATTGTTTTCAAGTTAGCTCAGT
GTATAGCACTAGAGCTGGTGTGGTACAATGTTACCAACCATTTTCATCTG
TAAAGAAGATTCATTTGCCGATTAGTAACGGGTTGAATAAATCCAATTTC
TCATTCACTTCATCATGCTCATCTCTTTCTCTTCCACTCGGAAGCAGAAG
CAGAAACTCCTTGATTCTCTGCAAAGCTCGGGAAGCTGTCAATGAAGTTC
AAGTGGTGACAGATTCAAGTTGGGAAAACCTTGTGATATCAAGTGAAAAC
CCTGTGCTTGTGGAGTTTTGGGCACCTTGGTGCGGACCATGCCGGATGAT
AGCGCCAGCTATTGAGGAATTAGCCAAAGAATACGCCGGAAAAGTTGCCT
GTTTCAAGCTCAACACCGATGATTCCCCCAACATTGCAACTAAGTATGGA
ATTAGAAGCATTCCAACTGTGCTCTTCTTCAAGAATGGAGAGAAGAAGGA
GAGCATCATTGGTGCTGTTCCCAAATCTACTTTGGTCTCTACTTTAGAAA
AATATGTAGAAGGAAGGGGCAAAAATCACTTTACTTGTTGTATGAAGGGC
ATATTAACCCAGTTTAAGTTTCTTTTCAATGGAGAAATCTCTTTCCCTTA
AGGGGGAAATTACCGGCGGGAAATTTAAATTTTTCTGGAAAAGGGACAAA
CTTCTTTTTCCTTTTTAATGAAATGGGTTCCGCTTTTTTTTTTTCCAAAA
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