EY678857

Overview
NameEY678857
Unique NameEY678857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY678857 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.136e-14
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 2 
Query:  293 PQCGSSNVFESTNEGNAG--NYXXXXXXXXXXXXXXXXXXXXTALNAGVTNLDSDNGAAGNS---GVGGITERISGNVVEEIWVAPKETAFDKFRQKRKERCFREKGSISKTRKKLPKTKAPVSGE 655
            PQCGSSNV+  T EGN    NY                      +NAG  N+ SDNGA  N    G G  +   SGN+ +E  ++ +E A  KFRQKRKERCFR+K    ++RKKL + +  V G+
Sbjct:  583 PQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRY-QSRKKLAEQRPRVRGQ 707
The following BLAST results are available for this feature:
BLAST of EY678857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APRR7_ARATH1.136e-1440.48Two-component response regulator-like APRR7 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-030-B11-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY678857 ID=EY678857; Name=EY678857; organism=Citrus sinensis; type=EST; length=912bp
GGGAAAAAAAAAAATTACCCCTTTTAATAATTAAGATTTGATAAATGATG
GTGATGTTGGACATTATGATGTGAATGGCCGTATCTGTTCATCTCAACCG
CTTTTACCTGAAAAAACGGATGACATGGGACTTAACTCAGGTCAATCACA
ATTGAGAGGGTCACACCATTCAGTTCAAGTGGAGAATCACCACCACCACT
ACCACCGTCATTATCATCAGCACGACCACAACATGCAGCAGTCACCACAG
GACTGTGATGATGTCTCGTTCAAGAATATGGTAGCTGCAGCTCCACAGTG
TGGGTCATCAAATGTATTTGAGAGTACCAATGAAGGTAATGCTGGAAATT
ATAGTGTGAATGGGAGTGCCTCGGGGAGTAACCACGGCAGCAATGGACAA
AATGGAAGCAGCACTGCCTTGAATGCTGGAGTAACAAATTTGGACAGTGA
CAATGGGGCAGCAGGAAATAGTGGAGTTGGTGGCATAACTGAAAGAATCA
GTGGGAATGTGGTAGAAGAAATTTGGGTTGCTCCAAAAGAAACTGCCTTT
GATAAATTTCGTCAAAAAAGGAAAGAAAGGTGTTTCCGGGAAAAGGGTTC
AATATCAAAAACCCGGAAAAAATTGCCCAAAACAAAGGCCCCCGTGTCCG
GGGAAAATTTTGTTTCAACAATTACCCGTCCAAATGGCCATTTAGGGAAA
AAAAAACTGCGAACCAAACGGGCCATAACCTTCTGAAGAATTTTTCAAAT
GGACAATCTAAAAAATAACTTTGGGGGAATTGGCGGCCAAATTTTTAAAA
ATCACACCCCTTTATTCCCCCGGATAAAATCCTGGGGAAATTTTCGGGAG
CATTATAAAAATACCAATTTACACGGTTACAAGGGGGGGAGGAAGGGGGA
GGGGCCACAACA
back to top