EY680200

Overview
NameEY680200
Unique NameEY680200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY680200 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.757e-60
Identity = 127/195 (65.13%), Postives = 144/195 (73.85%), Query Frame = -2 
Query:  192 HGGGRVL-------GGCWTPFPLRFRGSPKKGFQAGFKHHFSREFKRV*SWGAISIAQAWSLRELAVKGLQIYKPKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 755
            H GG +        GG  TP    + GS K G +  F     +E ++  + G  + +    L EL + G  I K KQMFNIICELPETVARTLVPR+RVVKGSGKA+NYLTPPRILLA+VT+WLRRGRWFDDQGRALYAAEADR+RNWAENR R S TDAMEMYTENTWVSVFSLSVVCAFIIL ST  ++FPGT
Sbjct:  306 HSGGHIFNMDGAGSGGSSTPLTAVY-GSTKCGLRQ-FHGSIVKESQKT-NVGLHTASPGMVLTELLLSGSSI-KNKQMFNIICELPETVARTLVPRMRVVKGSGKAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496
[Close]
BLAST of EY680200 vs. ExPASy Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.581e-58
Identity = 123/181 (67.96%), Postives = 142/181 (78.45%), Query Frame = -2 
Query:  192 GGCWTPFPLRFRGSPKKGFQAGFKHHFSREFKRV*SWGAISIAQAWSLRELAVKGLQIYKPKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 734
            GG  TP    + GS K G +  F+    +E +R    G  + +    L +L + G  + + KQMFN+ICELPETVARTLVPR+RVVKGSGKAINYLTPPRILLALVTAW+RRGRWFD++GRA+YAAEADRIRNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G    PGT
Sbjct:  329 GGSSTPLTAVY-GSTKCGLRQ-FQASLLKESRRS-KVGVHTASPGMVLTDLLLSGSSL-RNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSG-GPLPGT 504
The following BLAST results are available for this feature:
BLAST of EY680200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NYC1_ARATH2.757e-6065.13Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
NYC1_ORYSJ2.581e-5867.96Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-E03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680200 ID=EY680200; Name=EY680200; organism=Citrus sinensis; type=EST; length=858bp
CAATCTTTACATAAACCTACACTATGACTACGTACGGTACATACTTTATC
CCAGGATGAATGATCTAATAAAATAACTGAACACTTGCATATATGGTTAA
GGGCCTGAAATTGCCCGTGAATTCACACTAAAAGTGCCAGCTTGTTGTAG
TTCTGACGCTTTCTGGTTGCAACCGAAGGTAAAAAGAATCAGGTGCCTGG
AAATGTGTTGCTACCTGTGCTGGAGAGGATTATGAAGGCGCAAACTACGG
AAAGGGAGAACACGGATACCCATGTGTTCTCTGTGTACATCTCCATTGCA
TCTGTAAAGGAAAACCGTGCCCGATTTTCAGCCCAGTTCCGTATCCGGTC
TGCTTCTGCAGCATACAATGCCCTTCCCTGGTCATCAAACCAACGTCCTC
GTCGCAGCCATGCAGTGACTAATGCAAGTAGTATCCTGGGAGGAGTCAAG
TAATTTATAGCCTTCCCTGAACCCTTCACCACCCGTATCCGTGGAACTAA
AGTTCTAGCCACAGTTTCAGGAAGCTCGCAAATGATATTAAACATTTGTT
TTGGTTTGTAAATTTGAAGCCCCTTAACAGCCAATTCCCGTAAGGACCAT
GCCTGGGCGATGCTGATTGCACCCCAACTTTAAACCCGCTTAAACTCCCT
TGAAAAGTGATGCTTGAAACCTGCCTGAAACCCCTTTTTTGGGGAACCCC
TAAACCGCAAGGGAAAGGGGGTCCAACACCCCCCCAAAACCCGCCCCCCC
CCATGTTAAAATATGGGGCCCCCCCTTTGGGCGGGTCCCCCCCTCCCCCC
CAATACCCCCCCCAAAGGGCAAAAAAAAAAAAACCACAAAAAATTTGGTG
AGAAAACA
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