EY673050

Overview
NameEY673050
Unique NameEY673050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 1.183e-69
Identity = 144/235 (61.28%), Postives = 173/235 (73.62%), Query Frame = 2
Query:   98 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFPGNRLEVP*FHVFGLPFGK 802
            M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQI+VPIVFR            HSQCYAAW AS+P +++  P+   E ARG++K+ +      + FLE +   G  FP +   +     F LP GK
Sbjct:    1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPY-SAEDARGLLKAAIRDPD-PVVFLENELLYGESFPISEEALD--SSFCLPIGK 230          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.107e-67
Identity = 147/235 (62.55%), Postives = 165/235 (70.21%), Query Frame = 2
Query:   98 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFPGNRLEVP*FHVFGLPFGK 802
            M G+IR K           IRP  S  R +SSA KQM VR+ALNSALD EMSAD KVFLMGEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS+GQISVPIVFR            HS CYA+W  S P +++  PH   E ARG++K+ +      + FLE +   G  FP +   +     F LP GK
Sbjct:    1 MLGVIRNKT----------IRPSFSAFRFFSSA-KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPH-SAEDARGLLKAAIRDPD-PVVFLENELLYGESFPVSAEVLD--SSFWLPIGK 220          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.360e-49
Identity = 104/204 (50.98%), Postives = 140/204 (68.63%), Query Frame = 2
Query:  188 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFPGNRLEVP*FHVFGLPFG 799
            S+ VK+M VR+ALNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTPITE GFTG+  GAA+ GL+P+ EFMTFNFSMQAIDHI+NSAA++ YMS G  + PIVFR            HSQ +A W  S+P +++  P+   E ARG++K+ +      +  LE +   G  FP ++  +     F LPFG
Sbjct:   32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPY-SAEDARGLLKAAIRDPN-PVVVLENEILYGKTFPISKEALS--EDFVLPFG 231          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.029e-49
Identity = 93/164 (56.71%), Postives = 125/164 (76.22%), Query Frame = 2
Query:  194 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRL 685
            A K++ VR+A+NSALDEE++ D KVF+MGEEV +Y GAYKI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EFMTFNF+MQAIDHIINS+AK++YMS G++  PIV+R            HSQC+AAW  S+P +++  P    +  RG++KS +
Sbjct:   25 ATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADH-RGLLKSAI 187          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.503e-48
Identity = 104/199 (52.26%), Postives = 133/199 (66.83%), Query Frame = 2
Query:  206 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFPGNRLEVP*FHVFGLPFGK 802
            M VREAL  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF G+GVGAA  GL+P+VEFMTFNF+MQAID IINSAAK+ YMS GQ+  PIVFR            HSQCYAAW + +P +++  P+     A+G++K+ +      + FLE +   G  F     EVP    F LP GK
Sbjct:  138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPY-TAADAKGLLKAAIRDPN-PVIFLENEILYGQSF-----EVPKLDDFVLPIGK 329          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.836e-47
Identity = 99/185 (53.51%), Postives = 128/185 (69.19%), Query Frame = 2
Query:  194 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFP 748
            A   M VR+ALN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTPITE GF GI VGAA+ GL+P+ EFMTFNFSMQAID IINSAAK+ YMS+G++ VPIVFR            HSQ ++AW A  P +++  P+   E A+G++K+ +      + FLE +   G  FP
Sbjct:   21 AASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPY-SAEDAKGLLKAAIRDDN-PVVFLENEILYGQSFP 203          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.838e-46
Identity = 99/200 (49.50%), Postives = 134/200 (67.00%), Query Frame = 2
Query:  203 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFPGNRLEVP*FHVFGLPFGK 802
            Q  +REAL  A+ EEM  D +VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPI+E GF+GIGVGAA  GL+PV+EFMT NFSMQAIDHIINSAAK++YMS GQ+  PIVFR            H+Q +  W A++P + +  P+  ++ A+G++K+ +      + FLE +   G  F     +VP    F LP GK
Sbjct:  138 QQTLREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAID-AKGLLKAAIRSDD-PVVFLECELLYGKTF-----DVPKMDDFVLPIGK 330          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.838e-46
Identity = 98/202 (48.51%), Postives = 133/202 (65.84%), Query Frame = 2
Query:  140 SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFF 745
            +P + +RP  +      S+ K M VREALNSA+ EE+  D  VFL+GEEV +Y GAYK+SKGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEFM+FNFSMQAIDH++NSAAK++YMS G     +VFR            HSQ ++ W  S+P +++  P+   E ARG++K+ +      + FLE +   G  F
Sbjct:   17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPY-SAEDARGLLKAAIRDPN-PVVFLENELLYGESF 216          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.094e-46
Identity = 99/200 (49.50%), Postives = 135/200 (67.50%), Query Frame = 2
Query:  203 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRLEGTGIRLFFLEVKRFMGGFFPGNRLEVP*FHVFGLPFGK 802
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA+DHI+NSAAK++YMS GQ+  PIVFR            HSQ YAA  + +P +++  P+   E  +G++ + +      + FLE +   G  F  +       +V  +PFGK
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRCPIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPY-SAEDHKGLMITAIRDDN-PVIFLENEILYGHSFDISE------NVEPIPFGK 193          
BLAST of EY673050 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 4.094e-46
Identity = 91/164 (55.49%), Postives = 116/164 (70.73%), Query Frame = 2
Query:  194 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRXXXXXXXXXXXXHSQCYAAWNASLPWVEITEPH*VLEKARGIVKSRL 685
            A  Q+ VREA+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G  SVPIVFR            HSQC+AAW    P +++  P    E A+G++KS +
Sbjct:   29 AALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPW-SSEDAKGLIKSAI 191          
The following BLAST results are available for this feature:
BLAST of EY673050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ARATH1.183e-6961.28Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA1.107e-6762.55Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.360e-4950.98Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI3.029e-4956.71Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME1.503e-4852.26Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CAEEL4.836e-4753.51Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO1.838e-4649.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_YEAST1.838e-4648.51Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR4.094e-4649.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BOVIN4.094e-4655.49Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-089-E08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY673050 ID=EY673050; Name=EY673050; organism=Citrus sinensis; type=EST; length=887bp
GGGCTGTGCGTTGCAACCTTTTTCCTATTTCCCTCTCCACGGCGATCGGA
TCGCTGATAACTTTCACTTCTGGATTTTCATTGAAACAGAGTTGAAGATG
TGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCTGTTGC
GAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGCAGTTA
AACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATGAGGAGATG
TCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGGGAATATCA
GGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCCTGAGA
GAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTGGAGTT
GGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATGACATTTAA
CTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGCAAAATCAA
ATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTTCAGAGGGCCT
ACTGGTGCTGCTGCCGGAGTGGGTGCCCCACACTCTCAATGTTATGCAGC
ATGGAATGCCTCACTCCCCTGGGTTGAAATAACTGAACCCCATTAAGTTC
TGGAAAAGGCTCGTGGGATTGTAAAAAGTCGATTAGAGGGAACCGGGATC
CGGTTGTTTTTCCTTGAAGTGAAACGTTTTATGGGTGGATTCTTTCCCGG
TAATCGACTGGAAGTTCCTTGATTTCACGTTTTTGGCCTTCCATTTGGCA
AAACTTAGATCTGCTAAACAAAGGGACACGGGTGGCACTTATTTACGGTT
TCTTCCCCCAACTTTGGGGGCCCCTTTTCTTTCAGGG
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