EY736418

Overview
NameEY736418
Unique NameEY736418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length173
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB1_PSEU2 (Phosphate import ATP-binding protein pstB 1 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pstB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.024e-16
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            YA++HHEKLSRREM+DRVEQALRG ALWDEVKDKLK            RLCIARTIA
Sbjct:  115 YAIKHHEKLSRREMEDRVEQALRGAALWDEVKDKLKQSATGLSGGQQQRLCIARTIA 171          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB1_PSESM (Phosphate import ATP-binding protein pstB 1 OS=Pseudomonas syringae pv. tomato GN=pstB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.024e-16
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            YA++HHEKLSRREM+DRVEQALRG ALWDEVKDKLK            RLCIARTIA
Sbjct:  115 YAIKHHEKLSRREMEDRVEQALRGAALWDEVKDKLKQSATGLSGGQQQRLCIARTIA 171          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB1_PSE14 (Phosphate import ATP-binding protein pstB 1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pstB1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.024e-16
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            YA++HHEKLSRREM+DRVEQALRG ALWDEVKDKLK            RLCIARTIA
Sbjct:  115 YAIKHHEKLSRREMEDRVEQALRGAALWDEVKDKLKQSATGLSGGQQQRLCIARTIA 171          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB2_RHIL3 (Phosphate import ATP-binding protein pstB 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=pstB2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.040e-12
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            Y +RHHE++S+ EMD RVEQALR  ALWDEVKDKLK            RLCIAR +A
Sbjct:  124 YGIRHHERISKAEMDVRVEQALRSAALWDEVKDKLKGSGLGLSGGQQQRLCIARAVA 180          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB_XANC5 (Phosphate import ATP-binding protein pstB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=pstB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.316e-12
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            Y +RHHEKLS+ +M +RVEQALR GALWDEVKDKL             RLCIAR +A
Sbjct:  123 YGIRHHEKLSKADMQNRVEQALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVA 179          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB_XANAC (Phosphate import ATP-binding protein pstB OS=Xanthomonas axonopodis pv. citri GN=pstB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.316e-12
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            Y +RHHEKLS+ +M +RVEQALR GALWDEVKDKL             RLCIAR +A
Sbjct:  123 YGIRHHEKLSKADMQNRVEQALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVA 179          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB_BRAJA (Phosphate import ATP-binding protein pstB OS=Bradyrhizobium japonicum GN=pstB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.160e-12
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            + +R +EK+S+ EMDDRVE+ALRGGALW+EVKDKL             RLCIART+A
Sbjct:  129 FGIRLYEKISKSEMDDRVEKALRGGALWNEVKDKLNASGLSLSGGQQQRLCIARTVA 185          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB_XANOR (Phosphate import ATP-binding protein pstB OS=Xanthomonas oryzae pv. oryzae GN=pstB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            Y +RHHEKLS+ +M +RVE ALR GALWDEVKDKL             RLCIAR +A
Sbjct:  123 YGIRHHEKLSKADMQNRVEHALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVA 179          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB_XANOM (Phosphate import ATP-binding protein pstB OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=pstB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            Y +RHHEKLS+ +M +RVE ALR GALWDEVKDKL             RLCIAR +A
Sbjct:  123 YGIRHHEKLSKADMQNRVEHALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVA 179          
BLAST of EY736418 vs. ExPASy Swiss-Prot
Match: PSTB_XANCP (Phosphate import ATP-binding protein pstB OS=Xanthomonas campestris pv. campestris GN=pstB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.801e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 2
Query:    2 YAVRHHEKLSRREMDDRVEQALRGGALWDEVKDKLKXXXXXXXXXXXXRLCIARTIA 172
            Y +RHHEKLS+ +M +RVE ALR GALWDEVKDKL             RLCIAR +A
Sbjct:  123 YGIRHHEKLSKADMQNRVEHALRQGALWDEVKDKLGQSALGLSGGQQQRLCIARAVA 179          
The following BLAST results are available for this feature:
BLAST of EY736418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSTB1_PSEU22.024e-1671.93Phosphate import ATP-binding protein pstB 1 OS=Pse... [more]
PSTB1_PSESM2.024e-1671.93Phosphate import ATP-binding protein pstB 1 OS=Pse... [more]
PSTB1_PSE142.024e-1671.93Phosphate import ATP-binding protein pstB 1 OS=Pse... [more]
PSTB2_RHIL31.040e-1259.65Phosphate import ATP-binding protein pstB 2 OS=Rhi... [more]
PSTB_XANC52.316e-1259.65Phosphate import ATP-binding protein pstB OS=Xanth... [more]
PSTB_XANAC2.316e-1259.65Phosphate import ATP-binding protein pstB OS=Xanth... [more]
PSTB_BRAJA5.160e-1257.89Phosphate import ATP-binding protein pstB OS=Brady... [more]
PSTB_XANOR8.801e-1257.89Phosphate import ATP-binding protein pstB OS=Xanth... [more]
PSTB_XANOM8.801e-1257.89Phosphate import ATP-binding protein pstB OS=Xanth... [more]
PSTB_XANCP8.801e-1257.89Phosphate import ATP-binding protein pstB OS=Xanth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-705-016-B02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736418 ID=EY736418; Name=EY736418; organism=Citrus sinensis; type=EST; length=173bp
CTATGCCGTGCGCCACCATGAAAAGCTGTCGCGCCGGGAAATGGATGATC
GAGTCGAGCAAGCCTTGCGCGGCGGCGCGCTGTGGGATGAGGTGAAAGAC
AAACTCAAGCAGAGCGCCCAGAGTCTCTCAGGCGGGCAGCAGCAACGCCT
GTGCATCGCCCGCACCATTGCGC
back to top