EY650487

Overview
NameEY650487
Unique NameEY650487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650487 vs. ExPASy Swiss-Prot
Match: EXD1_MOUSE (Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus GN=Exd1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  196 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLADPRYCGISYQEKEEVRVLLXXDPQFWTYRPLTELMVRAAADDVRFL 672
            ++Q V+    EG ++CRHG LC +Q+A    +YL D  + G        +  LE   I KVIHDC+  S+ L  Q+GI L+NV DTQ+A  L    E     P+   +        L   PRY  + + E+ + R+    +P+ W  RPL   +++  A +  +L
Sbjct:  153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRY--LFFLEERQKRI--QENPEIWLTRPLPPSLLKILALETTYL 313          
BLAST of EY650487 vs. ExPASy Swiss-Prot
Match: EXD1_HUMAN (Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens GN=EXD1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 53/165 (32.12%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  196 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-----FVGLLADPRYCGISYQEKEEVRVLLXXDPQFWTYRPLTELMVRAAADDVRFL 672
            ++Q V+    EG ++CRHG LC +Q+A    +YL D  + G        +  LE   I KVIHDC+  S+ L  Q+GI L+NV DTQ+A  L    E     P+   +        L   P+Y  +S+ EK +   L+  +P+ W  RP++  +++  A +  +L
Sbjct:   96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATYL 256          
The following BLAST results are available for this feature:
BLAST of EY650487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXD1_MOUSE7.449e-1432.12Exonuclease 3'-5' domain-containing protein 1 OS=M... [more]
EXD1_HUMAN7.449e-1432.12Exonuclease 3'-5' domain-containing protein 1 OS=H... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-011-E11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650487 ID=EY650487; Name=EY650487; organism=Citrus sinensis; type=EST; length=923bp
CAGAGGGGAAAAGAAAAAATTTTAAAAAAAATGATCTGGTTGGATGGTCC
CGATGACATGGCTTCGTCTCCTTCTCATCAAACTCATATTCCCCTCTCTT
CAGACCCTGATGGAAAGCCCATAGATTCAGTGGTTCCAATCCATATTGTG
ACCAATGCTTCTCAACTTCCTGCTGAGTTCCTGGAACCATCGTCTGAGAG
GCAATTGGTCATTGGTTTTGACTGTGAGGGAGTTGACCTTTGTCGCCATG
GAAGTCTTTGTATTATGCAGCTAGCATTTCCAGATGCTATATATCTGGTT
GACGCTATTCAGGGTGGGGAGACGGTTGTGAAAGCCTGTAAGCCTGCACT
TGAGTCTAGTTACATCACAAAAGTTATTCACGATTGCAAACGAGATAGTG
AGGCATTATATTTTCAATTTGGCATTAAGTTGCACAATGTTGTGGATACC
CAGATTGCTTATTCTTTAATAGAGGAGCAGGAAGGTCGGAAAAGATCACC
GGATGACTACATATCATTTGTTGGTCTTCTCGCAGATCCACGCTATTGTG
GTATATCTTATCAAGAGAAGGAAGAGGTTCGTGTACTCCTTANGCANGAC
CCCCAGTTTTGGACATACAGACCACTAACTGAACTGATGGTCCGAGCAGC
TGCAGATGATGTCCGCTTTCTACCGTACATCTATCACAATATGATGAAGA
AACTAAACCCAACATCCTTATGGTACCTTGCAGTGCGTGGTGCACTATAT
TGTCGTTGTTTCTGCATCAATGAAAATGATTATGTGGATGGGGCACCTCT
CCCGCCTGTTCCAGATTACTTGATAGTGGAGGGAGATGCTCCTGAAGAAA
AAATCTATCATTCCTGATGTACCCCCGGAAAGATGGGACGTTATAGGAAG
AGAAGGTCTTCATTTTGGCTTAA
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