EY650474

Overview
NameEY650474
Unique NameEY650474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: SCS2_YEAST (Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae GN=SCS2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.249e-13
Identity = 49/160 (30.63%), Postives = 80/160 (50.00%), Query Frame = 2
Query:  146 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP-KAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPF---GTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVEN 613
            ++I P  L +   + +QST    + N SDQ +AFKVKTT+PK YCVRPN +++ P + I    + +        D +C+DKFL+  +  P+   G +  D+ SD+ A+   + + +K     L+SP   P       E K+   P     + + +  V N
Sbjct:    4 VEISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGLTEEPAADFKCRDKFLVITLPSPYDLNGKAVADVWSDLEAEFKQQAISKKIKVKYLISPDVHPAQNQNIQENKETVEPVVQDSEPKEVPAVVN 163          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  164 ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAP-PDLQCKDKFLIQGIVV-PFGTSDEDITSDMFA--KDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVA 637
            EL F       S  +I + N + + V FKVKTT+PK YCVRPN   I+PK+  +  V +QA    P PD +C+DKFLIQ + +    TS+ +   + +   +  G+ + ++K+R +  S  Q P    +  E    S+P  S++    L+     P   GV+
Sbjct:    8 ELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCV-YSTKQPPQSADKQVENTSTSNPPVSVEGSENLASSVGGPTAVGVS 168          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPB_RAT (Vesicle-associated membrane protein-associated protein B OS=Rattus norvegicus GN=Vapb PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 56/205 (27.32%), Postives = 100/205 (48.78%), Query Frame = 2
Query:  137 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAK 748
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  +I   A  + +V +Q     P + + K KF++Q +  P  TSD +    ++ +   + + + KLR +   P ++    P + E+ +   P ++ + +  ++      P D       + E  +   E+   ++       KE D  RA K
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVMLQPFDYDPNE-KSKHKFMVQSMFAPPDTSDMEA---VWKEAKPEDLMDSKLRCVFELPAEN--AKPHDVEINK-IMPTSASKTEAPVAAKPLTSPLDDAEVKKVMEECRRLQGEVQRLREES--RQLKEEDGLRARK 200          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPB_HUMAN (Vesicle-associated membrane protein-associated protein B/C OS=Homo sapiens GN=VAPB PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  137 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 520
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   A  + +V +Q     P + + K KF++Q +  P  TSD +    ++ +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSDMEA---VWKEAKPEDLMDSKLRCVFELPAEN 129          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPB_BOVIN (Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.169e-11
Identity = 44/129 (34.11%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  137 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 520
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   A  + +V +Q     P + + K KF++Q +  P  TSD +    ++ +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPTDTSDMEA---VWKEAKPEDLMDSKLRCVFELPAEN 129          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPB_PIG (Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.527e-11
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  137 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 520
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   A  + +V +Q     P + + K KF++Q +  P  TSD +     + +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQPFDYDPNE-KSKHKFMVQSMFAPADTSDMEAA---WKEAKPEDLMDSKLRCVFELPAEN 129          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPB_MOUSE (Vesicle-associated membrane protein-associated protein B OS=Mus musculus GN=Vapb PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.803e-11
Identity = 43/129 (33.33%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  137 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS 520
            E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT P++YCVRPN  +I   A  + +V +Q     P + + K KF++Q +  P  TSD +    ++ +   + + + KLR +   P ++
Sbjct:    5 EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVMLQPFDYDPNE-KSKHKFMVQSMFAPPDTSDMEA---VWKEAKPEDLMDSKLRCVFELPAEN 129          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPA_PONAB (Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.803e-11
Identity = 44/124 (35.48%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  158 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVL 529
            P +LKF        T  ++L N SD+ V FKVKTT+P++YCVRPN  II P +    +V +Q     P + + K KF++Q I  P  TSD +        D    + + KLR +   P ++  L
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNE-KSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE---LMDSKLRCVFEMPNENDKL 139          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPA_HUMAN (Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.803e-11
Identity = 44/124 (35.48%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  158 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVL 529
            P +LKF        T  ++L N SD+ V FKVKTT+P++YCVRPN  II P +    +V +Q     P + + K KF++Q I  P  TSD +        D    + + KLR +   P ++  L
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNE-KSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE---LMDSKLRCVFEMPNENDKL 139          
BLAST of EY650474 vs. ExPASy Swiss-Prot
Match: VAPA_MOUSE (Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 44/124 (35.48%), Postives = 64/124 (51.61%), Query Frame = 2
Query:  158 PLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQHVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVL 529
            P +LKF        T  ++L N SD+ V FKVKTT+P++YCVRPN  II P +I   +V +Q     P + + K KF++Q I  P   SD +        D    + + KLR +   P ++  L
Sbjct:   20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDPNE-KSKHKFMVQTIFAPPNISDMEAVWKEAKPDE---LMDSKLRCVFEMPNENDKL 139          
The following BLAST results are available for this feature:
BLAST of EY650474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SCS2_YEAST1.249e-1330.63Vesicle-associated membrane protein-associated pro... [more]
YH75_SCHPO3.635e-1332.72Vesicle-associated membrane protein-associated pro... [more]
VAPB_RAT1.169e-1127.32Vesicle-associated membrane protein-associated pro... [more]
VAPB_HUMAN1.169e-1134.11Vesicle-associated membrane protein-associated pro... [more]
VAPB_BOVIN1.169e-1134.11Vesicle-associated membrane protein-associated pro... [more]
VAPB_PIG1.527e-1134.11Vesicle-associated membrane protein-associated pro... [more]
VAPB_MOUSE5.803e-1133.33Vesicle-associated membrane protein-associated pro... [more]
VAPA_PONAB5.803e-1135.48Vesicle-associated membrane protein-associated pro... [more]
VAPA_HUMAN5.803e-1135.48Vesicle-associated membrane protein-associated pro... [more]
VAPA_MOUSE9.898e-1135.48Vesicle-associated membrane protein-associated pro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-011-D09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650474 ID=EY650474; Name=EY650474; organism=Citrus sinensis; type=EST; length=908bp
TGTTTCTGTTTCTGTTTCTGATTCAGATCACCACACCTTAACAAATATCT
CCATCTTTGCCATTGCCGACAGGCTTGACTCCTCTGTGCCTCGAATTGTT
GGACTGCATTTTGACAAATTAGATTGAAACATGGCTGAAGAGCTACTAGA
CATCCAACCATTGGAACTCAAGTTTACATTTGAGGTGAAGAAACAAAGTA
CATGTGTAATTCAACTTGGCAACAAATCTGATCAGTGTGTTGCTTTCAAG
GTAAAAACTACATCTCCAAAGAAATATTGTGTAAGACCCAATGTAAGTAT
TATCAAGCCAAAAGCAATATCTGATTTTACAGTTACTATGCAAGCTCAGC
ATGTAGCTCCACCAGATTTGCAGTGCAAAGATAAGTTTCTGATTCAAGGC
ATAGTGGTTCCATTCGGGACTTCTGACGAGGACATTACTTCCGATATGTT
TGCAAAAGATTCCGGTAAGTATGTTGAAGAAAAGAAGCTGCGAGTGATTC
TAATGAGCCCACCCCAGTCCCCAGTTTTGCTGCCAAGAAATGGAGAGTTA
AAGCAAGATTCATCCCCTGAGACATCATTGCAAAAAGATAGAGCACTCAG
TGGAGTTGAAAACATACCTCCAGGCGATGGGGTAGCTGCAAATGCGGAGG
TGTTCGAAACTGCTAAGTTCGCAGATGAGTTAACAGAAACTAAGGATCTG
CAGTGGCTTGAAAATGCCAAGGAAAGAGATGAGTCAAGAGCGGCTAAGGA
TGTACAGATGTTCNGAACTACTAATGTCACAAATAAGTTAAGAAGAGCCC
AAGATGTGCNAGACGTTGAAAGCTCTANGGATATANATGAGCTAATAAAG
TGCAGCTGAGATGAACAGTCAAGGCCTGCANAGGATGCGAGCGAATTTGA
ACCANNCA
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