EY650454

Overview
NameEY650454
Unique NameEY650454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650454 vs. ExPASy Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:  100 SDSERAKSYITIHPAVTPASYPLRQAPIGRHPAFWER*TLDRCSTDTLYFAVDYQENTDERY*AAKELKKHSWRCHRKYNRWFLRHDEPNVANGEYQHGTYVYFDF 417
            SDSER + Y+  +P  TP  +     P      F++R      ST+TL+F   Y E T  +Y AAK LKK SWR H KY  WF RH+EP     E++ GTY+YFD+
Sbjct:  627 SDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQR-----LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY 727
[Close]
BLAST of EY650454 vs. ExPASy Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:  100 SDSERAKSYITIHPAVTPASYPLRQAPIGRHPAFWER*TLDRCSTDTLYFAVDYQENTDERY*AAKELKKHSWRCHRKYNRWFLRHDEPNVANGEYQHGTYVYFDF 417
            SDSER + Y+  +P  TP  +     P      F++R      ST+TL+F   Y E T  +Y AAK LKK SWR H KY  WF RH+EP     E++ GTY+YFD+
Sbjct:  629 SDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQR-----LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY 729
[Close]
BLAST of EY650454 vs. ExPASy Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe GN=not3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:  100 SDSERAKSYITIHPAVTPASYPLRQAPIGRHPAFWER*TLDRCSTDTLYFAVDYQENTDERY*AAKELKKHSWRCHRKYNRWFLRHDEPNVANGEYQHGTYVYFDF 417
            +D+ + + YI   P   P  YP  Q P+   P F      +    DTL++   Y+  T ++Y A +ELKK SWR H+KY  WF RH+EP +   E++ G+Y YFDF
Sbjct:  503 TDAAKPQYYIPKDPYPVPHYYP--QQPL---PLFDSSEMTELVDPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDF 603
The following BLAST results are available for this feature:
BLAST of EY650454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CNOT3_MOUSE1.768e-1843.40CCR4-NOT transcription complex subunit 3 OS=Mus mu... [more]
CNOT3_HUMAN1.768e-1843.40CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
NOT3_SCHPO6.952e-1538.68General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-011-C01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650454 ID=EY650454; Name=EY650454; organism=Citrus sinensis; type=EST; length=680bp
CCACGCGTCCGAGCAACATGGAACACTGGGCGGTCTGCCTGATCAGATGC
ACAATATGCATATGCTGGATATCTGCCTTTTATTAACTTCCACAGTCAAA
GTGATTCAGAACGCGCCAAGAGCTACATTACAATACACCCTGCTGTAACA
CCTGCTAGCTATCCTCTAAGGCAGGCACCCATTGGGAGACACCCTGCTTT
CTGGGAACGATAGACTTTGGACAGATGCAGCACCGATACACTGTACTTTG
CAGTTGACTACCAGGAAAATACTGACGAGCGATATTAGGCCGCTAAAGAA
CTAAAGAAGCACTCTTGGAGATGCCACAGAAAATACAACAGATGGTTCCT
ACGGCATGATGAGCCTAATGTCGCCAATGGTGAATACCAACACGGAACTT
ATGTGTACTTCGACTTTCATATCGGCAATGATGATCTCCAACATGGATGG
TGTGAAACGATCAACATCGATGTTCACTGGCGAGGATATCTACCTTGAAT
ATGACCTTATCGCATAGCGACTGACTGGAAGATACTATAACATTGACCAT
GGCCATCAATGGACTTGGAGCTGGCCATTTGAATGGATCACGCTAGTCCA
TAATGGCCTATGAATAGGTAAGCCGTGTTTCATATCCCGGTTTGGCTGTC
TATAAACTACACTTTCCTGTAAAAAAAAAA
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