EY650443

Overview
NameEY650443
Unique NameEY650443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650443 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 6.270e-112
Identity = 198/226 (87.61%), Postives = 205/226 (90.71%), Query Frame = 1
Query:   85 MGSSE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIXSNHSVIMYNNTMISFNMLEASRISGVKRFFYAXSACIYPEFKQLETNVSLNESDAWPAEPQDXYGLEKLASDELCKHYTKDFGIECRVGRFHNIMGPFGHGK-GEGKSPCCFWRR 750
            MGSSE  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNMLEA+RI+GVKRFFYA SACIYPEFKQLETNVSL ESDAWPAEPQD YGLEKLA++ELCKHYTKDFGIECRVGRFHNI GPFG  K G  K+P  F R+
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK 226          
BLAST of EY650443 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 3.112e-111
Identity = 197/226 (87.17%), Postives = 204/226 (90.27%), Query Frame = 1
Query:   85 MGSSE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIXSNHSVIMYNNTMISFNMLEASRISGVKRFFYAXSACIYPEFKQLETNVSLNESDAWPAEPQDXYGLEKLASDELCKHYTKDFGIECRVGRFHNIMGPFGHGK-GEGKSPCCFWRR 750
            MGSSE  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNMLEA+RI+GVKRFFYA SACIYPEFKQLETNVSL ESDAWPAEPQD YGLEKLA++ELCKHYTKDFGIECRVGRFHNI GPFG  K G  K+P  F R+
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK 226          
BLAST of EY650443 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 392.504 bits (1007), Expect = 1.888e-108
Identity = 188/215 (87.44%), Postives = 197/215 (91.63%), Query Frame = 1
Query:  115 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIXSNHSVIMYNNTMISFNMLEASRISGVKRFFYAXSACIYPEFKQLETNVSLNESDAWPAEPQDXYGLEKLASDELCKHYTKDFGIECRVGRFHNIMGPFGHGK-GEGKSPCCFWRRLL 756
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNMLEA+RI+GVKRFFYA SACIYPEFKQL+T VSL ESDAWPAEPQD YGLEKLA++ELCKHYTKDFGIECRVGRFHNI GPFG  K G  K+P  F R+ L
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAL 221          
BLAST of EY650443 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 5.493e-108
Identity = 187/225 (83.11%), Postives = 204/225 (90.67%), Query Frame = 1
Query:   85 MGSSEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIXSNHSVIMYNNTMISFNMLEASRISGVKRFFYAXSACIYPEFKQLE-TNVSLNESDAWPAEPQDXYGLEKLASDELCKHYTKDFGIECRVGRFHNIMGPFGHGK-GEGKSPCCFWRR 750
            MG++ GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFI SNHSVIMYNNTMISFNM+EA+RI+G+KRFFYA SACIYPEFKQLE TNVSL ESDAWPAEPQD YGLEKLA++ELCKHY KDFGIECR+GRFHNI GPFG  K G  K+P  F R+
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRK 225          
The following BLAST results are available for this feature:
BLAST of EY650443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ6.270e-11287.61GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI3.112e-11187.17GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ1.888e-10887.44GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH5.493e-10883.11GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-011-B01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650443 ID=EY650443; Name=EY650443; organism=Citrus sinensis; type=EST; length=956bp
CCACGCGTCCGAAAGCCAGCCATTCTCCTCCTCCTTTATCTTCTCCTCTT
TCATTAAACTCTCAAAGTTCAGGTGTTTTTCATAATGGGAAGTTCTGAAG
GAACCTATGGTGCATACACCTATGAGGAGCTTGAGAGGGAACCTTACTGG
CCTTCTGAGAAGCTCCGAATTTCTGTCACTGGGGCAGGTGGTTTTATTGC
CTCCCACATTGCTCGGCGTCTGAAGAGTGAAGGCCATTACATTATTGCCT
CTGACTGGAAGAAGAATGAGCACATGACTGAGGATATGTTCTGTCATGAA
TTCCACCTTGTTGACCTTAGGGTCATGGACAATTGCTTGAAAGTTACTAA
GGGGGTTGACCATGTGTTTAACCTTGCTGCTGATATGGGTGGTATGGGCT
TTATTCANTCCAACCACTCTGTTATCATGTATAACAATACCATGATCAGC
TTCAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAAAGAGGTTTTTCTA
TGCCTNCAGTGCCTGCATCTATCCCGAATTTAAGCAGCTGGAAACTAACG
TAAGCTTGAATGAGTCTGATGCCTGGCCCGCTGAGCCTCAAGATGNCTAT
GGCTTGGAGAAACTTGCAAGTGATGAGTTGTGTAAGCACTACACGAAAGA
CTTTGGAATTGAATGTCGTGTTGGAAGATTTCACAATATTATGGGCCCTT
TTGGACATGGAAAGGGGGAAGGGAAAAGCCCCTGCTGCTTTTGGCGAAGG
CTCTTACCTTACTGACAAGTTGGGATGGCGGGGAATGACTCAAAACTGAT
CTTTACCTTATTGGTGATGGGGTGAAGGGGGCCTAAATGGCCAATCAACT
TCCGGGGCCAGGGACATTGGAATGATAAATGGTAACAGAATGAATAGCGA
AATGTCTTACCGTGAGACAAAAATCTCTCCCCATTCCGGCCTGGGTGCGC
GGGGGA
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