EY650430

Overview
NameEY650430
Unique NameEY650430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650430 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  493 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCXTPLIP 720
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLC +PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of EY650430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH8.327e-1240.79RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-H11-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650430 ID=EY650430; Name=EY650430; organism=Citrus sinensis; type=EST; length=867bp
CCACGCGTCCGTTTTAGATAGACTAAGAAATTCAGCTCGTGCTAATCTTA
TTAAACGGTTCCTGATATTTCATCATCGACCCCAACTTTGGGTTGGAATT
GCTATCTTCTTTTGGCTCTTTTTCAGGATTCTGCAGTCATCATTTTTCCT
TTTTAAAAATTTTCGCTTCTCAGATATCAAGGAAGCAGTCACAAGATTTT
GCTTGATTTCTGATTCAGTATCTCAAATTTAGTACAAAATTGGGTATCTG
TAAATTTAAAATTTTAATTCGAAAACATGGGCCTCGCTAGTATGCCGTCC
GCATCAGAAGGAATGCTATGCTTGATTCTAATGAACACTGCTATGTCAAT
CTCAATCGTCAAAGGCATATTCAGATCAATCCTCAAGGGTGTCGGTTTCC
AGCTTGCTGACTCATCATCGCCACCGTATTCATATTTCGCATCACCTCAA
GTTGTCTCCGCAGAGCCATATGATGTAAATTTAAGTCCTCCCCTTAGCTA
TGTTGAGGAGTTCCGAAACCAGAACCCTGCAATCAAGTATGAAACATTGC
TCCATTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTTGACCGAGTTT
GAGCCTCAATCTGATATCAATAACTTGTCTTGTGGACATTTGTTTCATAA
AGTGTGCTTGGAGAAGTGGCTGGACTATTTGAATGTTACGTGCCCGCTTT
GCANGACACCTCTAATTCCCTGAGTTGAAGACGATCCCTCTTGCTCCTGG
GGAGAGTGTTTTATGAGCTTGTCTATTGGGGAGACTTCTTGTACAGCATG
TAGTGTACAGGTATTACTAATCATCGGCCGGATGGAAGGGTGTTACCCCC
TTCATGGGTGAGTAAAT
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