EY650429

Overview
NameEY650429
Unique NameEY650429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650429 vs. ExPASy Swiss-Prot
Match: PIF4_ARATH (Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.629e-16
Identity = 71/235 (30.21%), Postives = 100/235 (42.55%), Query Frame = 1
Query:  163 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSYGNSSNLIQDDETVSWI-HCPIEDSFE-KDFYSHLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQSTAPPKGELXPCXGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMS 861
            W+FE +  +S   + +   +ELVELLW++G VVL SQ          H E  Q QKQ          SS  ++D ETVSWI + P ED FE  DF SH FS + P     + + T +  + K    +PP  +       V     P+     MPPP+F + ++                                      S  + + E+ + S+ TVG SHCGSN    DLD+S
Sbjct:    6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQ---------THREQTQTQKQDHHEEAL--RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP-----LQRPTSETVKPKSSP-EPPQVM-------VKPKACPDPPPQVMPPPKFRLTNS--------------------------------------SSGIRETEMEQYSVTTVGPSHCGSNPSQNDLDVS 178          
BLAST of EY650429 vs. ExPASy Swiss-Prot
Match: PIF5_ARATH (Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.152e-12
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  142 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGS-YGNSSNLIQ--------DDETVSWIHCP---IEDSFEKDFYSHLFSELPPSGPMEVDKHTRQLREEKMVKFDPP 543
            M     DWNFE +  +S   + +  ++ELVELLW++G VVL SQA  +R+PS+     +Q   +TLR   + + ++   +Q        D ETVSWI  P   + D FE +F SH FS +   G  E  +   +  + +     PP
Sbjct:    1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQA--RREPSVQVQTHKQ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVIDPFESEFSSHFFSSIDHLGGPEKPRTIEETVKHEAQAMAPP 141          
The following BLAST results are available for this feature:
BLAST of EY650429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PIF4_ARATH1.629e-1630.21Transcription factor PIF4 OS=Arabidopsis thaliana ... [more]
PIF5_ARATH4.152e-1233.56Transcription factor PIF5 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-H10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650429 ID=EY650429; Name=EY650429; organism=Citrus sinensis; type=EST; length=932bp
CGCCTGCCAGTTCCGGTCCGGNATTCCCGCCTCGACCCCGCGTCCGGAGA
AAACAGAAAACCGAAGTGTTGCAGTTTCCACTTGAAGCAGAAGAACAAGT
CTTAAATTTTTTAACTTTTGCAAATATTTGTCTCCTCAGCCATGAATCCA
TGCATCCCTGATTGGAATTTTGAAGGTGATATCCCTATCAGCAACCAGAT
GAAACCAATGGGGCAAGATAATGAGTTAGTAGAGCTCCTATGGCAAAATG
GGCATGTGGTTTTGAGCAGTCAGGCTCAAACGCAAAGGAAACCGAGTCTC
AATCATAATGAGCCTCGACAAGTTCAGAAACAGACATTAAGGGGCAGTGG
TTCATACGGGAACTCAAGTAATTTGATCCAAGACGATGAAACAGTCTCGT
GGATCCACTGCCCGATTGAAGATTCCTTCGAAAAGGATTTCTATTCCCAT
TTATTCTCCGAGCTGCCACCGTCTGGTCCAATGGAGGTCGATAAGCACAC
GAGACAGCTCAGGGAAGAAAAGATGGTCAAGTTTGATCCTCCGGGTGCGG
TCACAAGTTCGCAACATCCAAACGTTAACCATTCGGTTGTTCCTGAACTA
CAAAGAAATGCGATGCCTCCTCCAAGATTCGAGGTCCATGATGCTGCTCC
GCAAAACAAAAACTTGGGTGATTTGGGAAAGCTTGTTAACTTTTCTCAAT
CCACAGCACCCCCAAAGGGTGAGTTANGACCTTGTANCGGACAATTTGAT
CGAAAAAGGTCCGGAAATTTGACACAGGGAGAAGTCAGGGAGTGTTCNAT
GATGACAGTGGGGTCAAGCCACTGCGGTAGCAATCAAGTTGCATACGATC
TTGATATGAGCCGAGCTCCACCAGTGGTGTGGGAACTACTGGCTNTCTNC
TGGNAAGTAAATGATGATGTTCGAAAGTAATT
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