EY650369

Overview
NameEY650369
Unique NameEY650369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650369 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.406e-34
Identity = 100/252 (39.68%), Postives = 111/252 (44.05%), Query Frame = 1 
Query:   64 PLCLSDKVHDVKLGDSAEDSTTVPSASDSQNNPXXXXXXXXXXXXXXXXXDFRGGNSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLFGSSNEPPKLIFTVGGKQLNRHLTIYQAIQRQLVLXXXXXXXXXXXXXXXXXXXXLWNDIYTITYQRADSQADRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDSILQGELPCDLXKSNPTYTILALLRVLEGLNQLAHRLRHXQSVTVMLEGK 819
            P+C  DKVHDVKL DS +D     + S  Q NP                 D   GNSY                                  L  SS+EP KLIFT  GKQL+RHLTIYQA+QRQL+L                     +NDIYTI YQR DSQ +R+                               LLDSILQGELPCDL KSN TY +LALLRVLEGLNQL  RLR         EGK
Sbjct: 1117 PMCTPDKVHDVKLADSVDDDGL--ATSGRQMNPASGGTSGAAAARASDSIDTGIGNSYGSRGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLNRSSDEPSKLIFTAAGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLVSSDGSR-FNDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDSILQGELPCDLEKSNSTYNVLALLRVLEGLNQLCPRLRAQTLSDRFAEGK 1365
The following BLAST results are available for this feature:
BLAST of EY650369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UPL3_ARATH6.406e-3439.68E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-010-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650369 ID=EY650369; Name=EY650369; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGCTCAGATGATGAAGATGATGATCATGAAGATGTGCTAAA
AGATGATTCTCTTCCTCTCTGCCTGTCTGACAAAGTGCATGATGTGAAAT
TGGGAGATTCAGCTGAGGATAGTACCACTGTTCCATCGGCCAGTGATAGC
CAGAATAATCCAGCTTCTGGATCCAGTAGCAGGGGTGCTACAGGTAGGGG
TTCTGATTCTGCTGATTTTAGGGGTGGCAATTCTTATGGTTCAAGGGGTG
CAATGTCTTTTGCTGCTGCTGCAATGGCTGGGCTTGGTTCTGCAAATGGC
AGAGGTGTCCGGGGAGGCAGAGATCGGCATGGACGTCCTCTATTTGGTAG
CTCCAATGAGCCCCCAAAGTTAATTTTCACTGTTGGTGGGAAACAGCTTA
ACAGGCATCTGACTATTTATCAGGCCATCCAGCGACAGCTTGTGCTGGAT
GATGATGATGATGATAGGTTTGGTGGCAGTGATTTCATATCTAGTGATGG
AAGCAGGCTGTGGAATGATATTTACACAATTACATATCAGAGGGCAGACA
GCCAAGCTGATAGGATGTCTGCTGGGGTTTCAAGTTCTGCTACTCCTTCA
AAATCTAGTAAATCTGGTTCTGCTTCCAATTCCAACTCTGATTCAGCGTC
TCGAATGTCACTTCTAGACAGCATCTTGCAGGGGGAACTTCCTTGTGATT
TGGNAAAATCTAATCCTACGTATACCATTTTGGCACTATTGCGTGTACTA
GAGGGGTTGAATCAGCTTGCACATCGTTTGAGACACANACAGTCTGTGAC
AGTTATGCTGGAGGGAAAATTTCNAGTTTAAATGAGCTTANTGGAACTGG
GGGTANGGTTCCTTATGAGGATTAATTACAGGAAGCCTACTCCAATTAGC
CGACAAATACA
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