EY650336

Overview
NameEY650336
Unique NameEY650336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650336 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 74/190 (38.95%), Postives = 105/190 (55.26%), Query Frame = 1 
Query:  229 SPSSQVSTEATDPPERELETNSQEEK----FDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGKLQCVYHGWCFSGSGDW*FIPQAPPDGPPVHTFE--KACAAVYPSTVQHDIVWFWANIAPRYKDYIKTKKPXHIP-GLDDPSFTNWLGNRDIPYG 777
            +P S  ++++T+    E E    +E+    F W   WYP+  V DLD  VP   ++LG D+V+W+DRN+ +W  F D CPHRLAPLSEGR+D+ G LQC YHGW F G G    IPQA   GP     +  +ACA  +P+ V   +++ W +      D   + +P  +P   D P F+     RD+ YG
Sbjct:   52 APPSVPTSDSTEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPD--ENGWDRANSIEPPRLPDDFDKPEFSTVTIQRDLFYG 239
The following BLAST results are available for this feature:
BLAST of EY650336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH2.619e-3238.95Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650336 ID=EY650336; Name=EY650336; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGAATCTTGCTTGATCTCTAGTTTGTGTTGAGAACGGTGCT
GCATGCAGCCATGGAAGCTCTTANACTCTCCTCGGTTTCACCTTTTTGTA
ACGCTACATTCAAACTTGAGTACAATAAGACCCACTTCACTAAGCCCAAG
TTCTTAAGCTTTCAGTTCAGTTCCCTGTCCACTTTATCATCTTTCTCATC
AAAACCATACAAAATCTTCACCACCTTATCACCATCGTCACAAGTTTCAA
CTGAAGCCACAGACCCACCAGAAAGAGAGCTTGAAACTAACTCACAAGAG
GAGAAATTTGATTGGTTCTCACAGTGGTATCCATTGATGCCGGTGTGTGA
TTTGGACAAGAGAGTCCCTCATGCAAAGAAAGTGTTGGGGCTTGATGTCG
TGGTTTGGTGGGACAGGAATGAGAATGAATGGAGAGTCTTTGCTGATGCT
TGTCCTCACAGATTGGCTCCTTTGTCAGAAGGAAGAATTGATCAATGGGG
GAAGCTTCAGTGTGTGTATCATGGCTGGTGCTTCAGTGGCTCGGGTGACT
GGTAATTTATCCCTCAGGCTCCCCCAGACGGCCCCCCGGTCCACACATTC
GAGAAAGCATGTGCAGCAGTTTATCCAAGTACCGTCCAGCATGACATCGT
ATGGTTTTGGGCCAATATTGCTCCTCGGTACAAGGATTATATCAAGACTA
AAAAACCTNCTCACATCCCGGGACTAGATGACCCGTCATTCACAAATTGG
TTGGGGAACAGAGATATACCTTATGGGATGCAAGGATCCATCCTTCATTT
TATTTGGGCGAGTTTCCCACGAAATTTAAATGGATTTGGCCTAACCGATA
TTGGCAGAGCCTTAAAAAACTAGTGACCTAAGGGAATGACACCT
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