EY650333

Overview
NameEY650333
Unique NameEY650333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650333 vs. ExPASy Swiss-Prot
Match: VP371_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.307e-44
Identity = 102/178 (57.30%), Postives = 126/178 (70.79%), Query Frame = 2 
Query:  203 MFKFWGS-NEQQAQPRPQDVTSQS-WYXXXXXXXXXXXXATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELRRETLQIARDNLDXELRMIELXNQSKXIRDTELAAAXEKLHDLERQKDNFRKCTLLPXFSKGS 730
            MF FWGS ++QQ Q RPQ+ +SQS WY             +PS+ S  S +  RP    Q  + VSP EAAGII  LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DELRRETLQ+ARDNL+ E +++EL NQ + IR TELA A EKL++LERQK+      +L  +S GS
Sbjct:    1 MFNFWGSKDQQQGQSRPQEASSQSPWY-------------SPSLVS--SPSSSRPQSSGQISAQVSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEE-----ILKFYSPGS 158
[Close]
BLAST of EY650333 vs. ExPASy Swiss-Prot
Match: VP372_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.047e-39
Identity = 94/178 (52.81%), Postives = 121/178 (67.98%), Query Frame = 2 
Query:  203 MFKFWGSNEQQ-AQPRPQ-DVTSQSWYXXXXXXXXXXXXATPSMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELRRETLQIARDNLDXELRMIELXNQSKXIRDTELAAAXEKLHDLERQKDNFRKCTLLPXFSKGS 730
            MF FWGS EQQ  Q RP  + ++  WY             +PS+ +  S +  RP    Q  SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+ELR+ETL +AR+NL+ E +++EL NQ + IR +ELA A EKL++LE Q++      +L  +S GS
Sbjct:    1 MFNFWGSKEQQQGQSRPSPEASATPWY-------------SPSLVT--SPSSSRPQTSGQIPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREE-----ILKFYSPGS 158
The following BLAST results are available for this feature:
BLAST of EY650333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VP371_ARATH9.307e-4457.30Vacuolar protein-sorting-associated protein 37 hom... [more]
VP372_ARATH4.047e-3952.81Vacuolar protein-sorting-associated protein 37 hom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650333 ID=EY650333; Name=EY650333; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGTTTTCTTTTTCTCTTCTTCCCGAGCACGCCACGCGGACG
CGGACTCAAGTTTCGATTGATATTTCCTTGAAGTTGATCAATCAAAGAAA
ACAATTGGCAAGAGATACAAGAATTCGCGATCCACTCGTTCTGTTATTGC
AATCTAGGGTTTATGTTCTTGGCCTGACCAAATAATCAGCCAATCCTGAG
CTATGTTCAAGTTCTGGGGTTCGAATGAGCAACAAGCTCAACCGCGTCCG
CAAGATGTTACTTCACAATCTTGGTACCCTCCATCTGTAGTCTCCCCAGA
TTCTTCCCGCCCTGCTACGCCTAGTATGAGCTCTTTTGGCAGCTTAAATT
TACAAAGGCCAACAGAACAGTCACAACCCCTATCACATGTTTCACCAGCT
GAAGCTGCAGGCATTATTGCCCTCTTGAAGGACAAAAGTGTTGATGAGTT
ACGGAAGCTCTTGGCGGATAAGGATGCATACCGCCAATTTTTACTCTCAA
TTGATCAAGTTAAAATTCAAAACAATATAAGGGATGAACTTCGCAGGGAA
ACTTTGCAAATTGCCAGGGACAACTTGGACAANGAACTGCGCATGATTGA
GCTTANAAACCAAAGTAAANTTATTCGGGACACAGAATTGGCTGCTGCTC
ANGAGAAATTACACGATCTTGAGAGACAGAAAGACAACTTTAGAAAGTGT
ACTCTCCTGCCTNCCTTCTCAAAGGGATCANGAGCTATGAATAGACCCGA
GAGGATCTGAAACCTGCATAGCAGCTTCTTGTAAGGAAGTTGNATATGGG
GGCTTTGTGCAAATTACAAAAGCTGGGCACACTTACCACCGTGAGCGCTC
GTTATCTTTCNGNCAAGACAACTCGNTGACCCAGGGAGGCCGAAATAAAG
NTACACGAATTTTTTTATAAAACCTTTTATTTATATGGCTG
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