EY650332

Overview
NameEY650332
Unique NameEY650332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY650332 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.837e-18
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:  421 MDTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAW 558
            M+T SSGEDLV+KTRKPYTITKQRERWTEEEHNRF+EAL+LYGRAW
Sbjct:    1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAW 46
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BLAST of EY650332 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.045e-15
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  421 MDTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAW 558
            MDT +SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAW
Sbjct:    1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAW 46
The following BLAST results are available for this feature:
BLAST of EY650332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCA1_ARATH3.837e-1889.13Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
LHY_ARATH1.045e-1580.43Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650332 ID=EY650332; Name=EY650332; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGCTGGAGTTTTAAGTCTCAGAAGAAAACTCTTTCAGTCCT
GCTTCTTTTCTCTTCAACTTCTTCATTTATCTAGATAATTTAAACAAATA
GTTTTTTTTTTGTAAACTGTTTCCGATTCAGATCCACCGTTGCCGGTAAT
CATGATTCCTCCGGCAAGTCGCAGGTGAATTCTGTTCATGCGCTCTATCG
ATGCAGCCGGGCTTCTAGTACATCATGGCTTTCTCGAAGGGTTTTGGCAT
CTACGGGTTCGTTTTGTAGTGTTGCCTTATCAGGTTCTGTCAACCATTAC
TATAACAACGGCTTTGTCATTTGATACTGCAAGAAGAAATGAAGGGAGGG
TTTTGTTTTACCCACTGCTTGTTAGAGAGGATTTGAAGCAGCGCTAGCTG
CTAGCTGCCTGACTTTGGTTATGGACACCTACTCCTCTGGCGAAGACTTG
GTTCTTAAGACAAGGAAGCCATATACAATTACGAAGCAACGTGAACGATG
GACAGAGGAGGAGCATAATAGGTTTCTAGAAGCGCTGAAGCTTTATGGCC
GTGCTTGGCACGCATAGAAGGNTAAATTTTTCTGACGCCTTTTAACTTTT
CTTTTTTTCCTTTGNGAANGGCATGTTCTTGAAGNTCTCCAATTTTATTC
AATTTATTGTAATGTGGGTTAATTTTTCCATTAAACAGTTGAATTGGTTG
GATGTACCCTATTAGGATCACATGAAATGCTATTATTCAGTATTTTTGAC
TTATTGGGAGATCTGGCTCGCCTCTTCTTTCTATGTTTACATGGTNCGGG
CAGACATATAGGACAATNAAGCTGGCAGATCAAATCCTGCCAAATTCTTT
CCAGGTGGAGAAGAGCTCTTCTAAAGGGGTCTATTAGGAACAATTGAATT
ACTCCTCCCCCCTGCTAAAGAAAC
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