EY650331

Overview
NameEY650331
Unique NameEY650331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650331 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 6.208e-84
Identity = 170/287 (59.23%), Postives = 205/287 (71.43%), Query Frame = 2
Query:    2 NFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNAR*WSSAXSLQNKIGDGKAQANSHGHQMKDSLTGSDSQCLNQSGLSVVEKS---------ESCTVQ*PXRVVSAKASSDGKPATY*AR**XXLIHREGLYAGLCRFQSVLTTFYSXSRLEGIAXLRHGDIFHSXHIFQPI 835
            NFLLDKLLKKTSAR +SKTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLRKQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRMLGDD +TR +W    +KN  G  ++SL+ R  +   + QNK  +GKAQ +SHG   KD+L+GSDSQ LNQS +S+  K          + C +Q   ++     S      +        ++ REG   GL  FQSVLTTF   SRL  IA +RHGDIFHS +I   I
Sbjct:  101 NFLLDKLLKKTSARHVSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAW--PHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKS--------VVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSI 377          

HSP 2 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 3
Query:  588 KKASPAQFNDLXELYLQKRRQMANQPHTKQDSDXNLYTERGYMLVFADFNLC*LLFTRTVDWRVLLDFGMG-IYFIXPIYFSL*FDRXDQLFA 863
            KK   AQFNDL E YLQKRRQ+A+QP++KQ++D ++    GY    ADF      FTR    RV+ +   G I+    I  S+ FDR D+LFA
Sbjct:  295 KKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFA 387          
BLAST of EY650331 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.171e-82
Identity = 175/289 (60.55%), Postives = 207/289 (71.63%), Query Frame = 2
Query:    2 NFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDSNTRKSWLSSIDKNSSGIITSSLNAR*WSSAXSLQNKIGDGKAQANSHGH--QMKDSLTGSDSQCLNQSGLSVVEKS---------ESCTVQ*PXRVVSAKASSDGKPATY*AR**XXLIHREGLYAGLCRFQSVLTTFYSXSRLEGIAXLRHGDIFHSXHIFQPI 835
            NFLLDKLLKKTS RQISKTASP+E+FRQA+Q+GC V++KE+D+L+ LL+EKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKE+QTDL +IKEDI AVE+HR+DLYRARDRYSVKLRML DDS  RKS  SS+D NSSG+ +S LN R   S+ S   K  DGK+Q +SHGH  Q +D +TGSDSQ +NQSGL++V K          + C +Q   +          +   +        I REG   GL  FQSVLTTF   SRL  IA +RHGDIFHS +I   I
Sbjct:   96 NFLLDKLLKKTSDRQISKTASPVEHFRQAVQKGCEVTMKELDTLLLLLTEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEVQTDLQFIKEDIGAVEKHRMDLYRARDRYSVKLRML-DDSGGRKSRHSSMDLNSSGLASSPLNLRGGLSSGS-HTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSGLALVRKKRVHTQFNDLQECYLQKRRQAADKPHGQQERDTNF--------ISREGYSCGLDDFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSI 374          
The following BLAST results are available for this feature:
BLAST of EY650331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COP1_ARATH6.208e-8459.23E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
COP1_PEA1.171e-8260.55E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650331 ID=EY650331; Name=EY650331; organism=Citrus sinensis; type=EST; length=866bp
TAATTTCTTGCTCGACAAGCTATTGAAGAAGACTTCTGCTCGTCAAATAT
CAAAAACTGCTTCCCCTCTGGAAAATTTTCGTCAGGCATTACAACAGGGT
TGCGGAGTGTCAGTTAAGGAGATAGACAGCCTCATGTCACTCCTTTCAGA
GAAAAAGAGGAAAATGGAACAAGAAGAAGCTGAAAGAAATATGCAAATAC
TGCTGGACTTCTTGCATTGCTTACGGAAGCAAAAAGTTGACGAATTGAAA
GAGATACAAACTGATCTCCATTATATAAAGGAAGACATAAATGCTGTTGA
GAGACATCGGATAGATCTGTACCGTGCAAGAGATCGGTACTCTGTTAAAT
TGCGGATGCTTGGAGATGATTCTAATACAAGAAAGTCATGGCTTTCATCA
ATAGACAAGAACAGCAGTGGTATCATCACCAGTTCTCTGAATGCAAGATG
ATGGTCGTCTGCANGAAGTCTTCAAAACAAGATAGGGGATGGAAAAGCTC
AAGCAAACTCTCATGGACATCAGATGAAGGATTCTTTGACTGGGTCGGAC
TCACAGTGTCTTAATCAATCGGGTCTGTCTGTTGTAGAAAAAAGCGAGTC
CTGCACAGTTCAATGACCTANCAGAGTTGTATCTGCAAAAGCGTCGTCAG
ATGGCAAACCAGCCACATACTAAGCAAGATAGTGATANNAACTTATACAC
AGAGAGGGGCTATATGCTGGTCTTTGCAGATTTCAATCTGTGCTAACTAC
TTTTTACTCGNACAGTCGACTGGAGGGTATTGCTNGACTTCGGCATGGGG
ATATATTTCATTCANCCCATATATTTCAGCCTATAATTTGACCGGNATGA
TCAGTTGTTTGCACCT
back to top