EY650329

Overview
NameEY650329
Unique NameEY650329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650329 vs. ExPASy Swiss-Prot
Match: AROA_BRANA (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.441e-12
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  183 SVGTFVKQSLP*DIALRPIL*ISGADS*QGSKSVSKRIMATAALCEGTPVVDIYESTENIDHMLDAFNKRLLPD*LDSG*NDRLREADVGLFTMTTHS 476
            SV T  K S   +I L+PI  ISG     GSKS+S RI+  AAL EGT VVD   ++++I++MLDA  K  L    DS  N  + E   G+F  +  S
Sbjct:   67 SVSTSEKAS---EIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTVVDNLLNSDDINYMLDALKKLGLNVERDSVNNRAVVEGCGGIFPASLDS 161          

HSP 2 Score: 36.965 bits (84), Expect = 5.441e-12
Identity = 38/101 (37.62%), Postives = 49/101 (48.51%), Query Frame = 2
Query:  482 DIELLLDHDGTSMRSFTAGLTAAGGNSILC*MGCVH*CRDQWRTXSLLLNXYVHMILLGTDI-------CHAASITA-WATPCGNAELSGSM-IDILTALL 757
            DIEL L + GT+MR  TA +TAAGGN+     G     R + R    L+   V +  LG D+       C    + A    P G  +LSGS+    LTALL
Sbjct:  164 DIELYLGNAGTAMRPLTAAVTAAGGNASYVLDGVP---RMRERPIGDLV---VGLKQLGADVECTLGTNCPPVRVNANGGLPGGKVKLSGSISSQYLTALL 258          
BLAST of EY650329 vs. ExPASy Swiss-Prot
Match: AROA_ARATH (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Arabidopsis thaliana GN=At2g45300 PE=2 SV=3)

HSP 1 Score: 54.6842 bits (130), Expect = 7.063e-12
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  183 SVGTFVKQSLP*DIALRPIL*ISGADS*QGSKSVSKRIMATAALCEGTPVVDIYESTENIDHMLDAFNKRLLPD*LDSG*NDRLREADVGLFTMTTHS 476
            SV T  K S   +I L+PI  ISG     GSKS+S RI+  AAL EGT VVD   ++++I++MLDA  +  L    DS  N  + E   G+F  +  S
Sbjct:   71 SVSTAEKAS---EIVLQPIREISGLIKLPGSKSLSNRILLLAALSEGTTVVDNLLNSDDINYMLDALKRLGLNVETDSENNRAVVEGCGGIFPASIDS 165          

HSP 2 Score: 36.965 bits (84), Expect = 7.063e-12
Identity = 38/101 (37.62%), Postives = 49/101 (48.51%), Query Frame = 2
Query:  482 DIELLLDHDGTSMRSFTAGLTAAGGNSILC*MGCVH*CRDQWRTXSLLLNXYVHMILLGTDI-------CHAASITA-WATPCGNAELSGSM-IDILTALL 757
            DIEL L + GT+MR  TA +TAAGGN+     G     R + R    L+   V +  LG D+       C    + A    P G  +LSGS+    LTALL
Sbjct:  168 DIELYLGNAGTAMRPLTAAVTAAGGNASYVLDGVP---RMRERPIGDLV---VGLKQLGADVECTLGTNCPPVRVNANGGLPGGKVKLSGSISSQYLTALL 262          
BLAST of EY650329 vs. ExPASy Swiss-Prot
Match: AROA_PETHY (3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 5.696e-11
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 3
Query:  213 P*DIALRPIL*ISGADS*QGSKSVSKRIMATAALCEGTPVVDIYESTENIDHMLDAFNKRLLPD*LDSG*NDRLREADVGLFTMTTHSPE 482
            P +I L+PI  ISG     GSKS+S RI+  AAL EGT VVD   S+++I +ML A     L    DS     + E   GLF +   S E
Sbjct:   74 PSEIVLQPIKEISGTVKLPGSKSLSNRILLLAALSEGTTVVDNLLSSDDIHYMLGALKTLGLHVEEDSANQRAVVEGCGGLFPVGKESKE 163          

HSP 2 Score: 36.965 bits (84), Expect = 5.696e-11
Identity = 34/98 (34.69%), Postives = 47/98 (47.96%), Query Frame = 2
Query:  482 DIELLLDHDGTSMRSFTAGLTAAGGNSILC*MGCVH*CRDQWRTXSLLLNXYVHM-----ILLGTDICHAASITAWATPCGNAELSGSM-IDILTALL 757
            +I+L L + GT+MR  TA +T AGGNS     G     R + R  S L++    +       LGT       ++    P G  +LSGS+    LTALL
Sbjct:  164 EIQLFLGNAGTAMRPLTAAVTVAGGNSRYVLDGVP---RMRERPISDLVDGLKQLGAEVDCFLGTKCPPVRIVSKGGLPGGKVKLSGSISSQYLTALL 258          
The following BLAST results are available for this feature:
BLAST of EY650329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AROA_BRANA5.441e-1242.863-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_ARATH7.063e-1241.843-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
AROA_PETHY5.696e-1142.223-phosphoshikimate 1-carboxyvinyltransferase, chlo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-H01-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650329 ID=EY650329; Name=EY650329; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGGCATCAAAACACACGTGTTTTTACGACTCAGACGAAATT
ACAGCAACCCACATCTGTTTCTGCAATTTCGATTAGATCATCAGATCAGA
AGGTGTTCTTAGTGCGTGAGGTCTAATATACATTGACAGGGTGTGTAATA
TTATTACAGTATGTACAAACCCGGCTTGATATTCAGTGGGCACTTTTGTA
AAACAATCTTTACCATAAGATATTGCTTTGCGACCCATCCTATAAATTTC
CGGTGCGGATTCTTAGCAAGGTTCTAAGTCTGTATCCAAGCGGATTATGG
CTACCGCTGCCCTCTGTGAGGGGACACCCGTGGTGGACATTTATGAGAGC
ACTGAAAATATTGACCATATGCTCGATGCTTTTAATAAACGACTACTACC
TGACTGACTCGACTCTGGATGAAACGACCGATTGAGGGAAGCTGATGTAG
GTCTTTTTACGATGACCACACACTCACCTGAGATATCGAGCTCCTGCTTG
ATCATGACGGGACATCTATGCGTTCTTTCACTGCTGGACTTACTGCTGCA
GGTGGCAACTCGATCTTATGCTAGATGGGGTGCGTACATTGATGTAGAGA
TCAATGGCGGACANGCTCACTGCTGCTGAACANCTATGTGCACATGATAT
TGCTTGGGACCGACATTTGCCATGCTGCTAGCATCACTGCATGGGCGACT
CCATGCGGGAATGCCGAACTCTCTGGGAGCATGATAGACATACTGACTGC
TTTGCTATAGATGATGCTCAGNCCTCGTAATGTGCAATCGCATATCGATA
ACTGATTTTCGTCCTAGNTCAGATGATNCTTAACTGACGATCGCTTGGGG
TCTATCTAAGAATATATTTCTGGGATCGATGTAATCCTGGCGAAAAGAGA
CACCTTCCTGACTGATATAAAAAAGGGGCCTC
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