EY650313

Overview
NameEY650313
Unique NameEY650313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650313 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.653e-19
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  128 ECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 307
            +C PKC+YRCS TS+KKP              VP GTYGNKQ CPCYNNWKTK GGPKCP
Sbjct:   53 DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of EY650313 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.259e-18
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  125 SECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 307
            ++C P+C+YRCSATSHKKP              VP G YGNKQ CPCYNNWKT+EG PKCP
Sbjct:   36 TDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of EY650313 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.340e-14
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 2
Query:  125 SECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 307
            ++C  +C  RC  T + K               VPPG YGNKQVC CYNNWKT+EGGPKCP
Sbjct:   46 TQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
The following BLAST results are available for this feature:
BLAST of EY650313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GAST1_SOLLC5.653e-1963.33Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC1.259e-1860.66Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH9.340e-1450.82Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-009-F08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650313 ID=EY650313; Name=EY650313; organism=Citrus sinensis; type=EST; length=398bp
CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGTAAGGTGTTTTT
TTTTGGTGTCTTTGAACTTTTTTTGCCACATGAAATGTAAAGAGTAATAT
AATAATTTTGTTGCAAATGTAATTTCAGAATGCAATCCAAAGTGTTCTTA
TCGGTGTTCGGCGACGTCGCACAAGAAGCCATGCATGTTCTTTTGCTTAA
AGTGCTGCTCAAAATGCCTGTGCGTGCCTCCTGGAACTTACGGAAACAAG
CAAGTTTGCCCTTGTTACAATAACTGGAAGACCAAGGAGGGAGGACCCAA
ATGCCCTTGATTGAGAATTTTTTTTTTTTTTTTATCGAATCAATTTTATG
TCACTAATAAACAGGGCAATTCANAAAAAAAAAAATAAAAAAAAAAAA
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