EY650188

Overview
NameEY650188
Unique NameEY650188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.467e-36
Identity = 79/128 (61.72%), Postives = 98/128 (76.56%), Query Frame = 3
Query:  348 DHSFSRLLELAADNDVEGFKQCICDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHGIRHLIVLV 731
            +HSFS LLE AADNDVEGF++ + D S I ++GLWY  QR  +++VL+ RTPLMVA+ YGS+DVVK ILS  +A++NL+CG DKSTALH AASG SVN++ V KLLL  GAD N   AHG R + VLV
Sbjct:   36 EHSFSALLEFAADNDVEGFRRQLSDVSCINQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLV 163          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.429e-33
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 3
Query:  336 TMKSDHSFSRLLELAADNDVEGFKQCI-CDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHGIRHLIVLV 731
            T++++ +F+ LLELAA+NDVEG +  I  D S + E GLWY  Q+ SK +V  +RTPLMVAA YGS+DV+KLI+SLT ADVN  CG D++TALH AASGG+VNA+ V KLLL AGAD N   A G R   V+V
Sbjct:   38 TVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIV 170          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.664e-27
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 3
Query:  330 TETMKSDHSFSRLLELAADNDVEGFKQCI--CDTSAICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHGIR 713
            T T+ +D +F+ LLELAAD+D EG ++ +     +A  E GLWY      ++ VL+HRTPLMVAA YGS+ V++L+LSL   DVN  CG D +TALH AASGGS + V   KLLL AGAD++ T A G R
Sbjct:   58 TLTVDTDDAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYG-----RRKVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYR 182          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.580e-19
Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  333 ETMKSDHSFSRLLELAADNDVEGFKQCICDTSA-ICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHGIRHLIVLVSIQNVLI--QGGPLEDLXRNGG 791
            E+ + +     LLE AA +D++ FK+ + +    + E GLWY  +  SKK+ L+ RTPLMVAA YGS+ V+  I+S  K+DVN  CG ++ T LH A +G SVN + V  +LL A A  N   A+G + L V V +   +   +   +E L R GG
Sbjct:   19 ESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGG 174          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.817e-18
Identity = 53/119 (44.54%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  357 FSRLLELAADNDVEGFKQCICDTS--AICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHG 707
            FS LLE +A ND+ GFK  + +    +I   GLWY  +  SKK+  + RTPLM+AA +GS +VV  I+S    DVN +CG D +TALH A SG S N++ +  LLL   A+ +   A+G
Sbjct:   11 FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYG 129          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.565e-17
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  366 LLELAADNDVEGFKQCICDTSA--ICEVGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHG 707
            LLE AA +D+  FK+ I +  +  I E G WY  +  SKK+  + RTPLMVAA YGS++V+  I++  ++DVN  C  +K TALH A SG SV+ V + K+LL A A  N   A+G
Sbjct:   33 LLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANG 148          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 56/112 (50.00%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  366 LLELAADNDVEGFKQCICDTSAICE-----VGLWYSFQRLSKKIVLQHRTPLMVAAEYGSVDVVKLILSLTKA-DVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGAD 683
            LLELAA +DV+G +  + +           VGLWY   +       + RTPLMVAA YGS  VV L++ L    DVN   G D +TALH AASGGS NAV V KLLL AGAD
Sbjct:   27 LLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGRSK-----AYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGAD 133          
BLAST of EY650188 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  360 SRLLELAADNDVEGFKQCICDTSAICEV-GLWYSFQRLS-KKIVLQHRTPLMVAAEYGSVDVVKLILSLTKADVNLTCGLDKSTALHXAASGGSVNAVHVAKLLLFAGADSNPTCAHGIR 713
            S LLELAA +DV   ++ + +      V GLWY        ++ ++ RT  MVAA YGS  V+  +++   A+       D +T LH AA+GG+ NAV   +LLL AGA  +   A G+R
Sbjct:   26 SLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLR 145          
The following BLAST results are available for this feature:
BLAST of EY650188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H56_ARATH2.467e-3661.72Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H30_ARATH7.429e-3358.65Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H24_ORYSJ4.664e-2752.31Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H47_ARATH3.580e-1939.74Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH8.817e-1844.54Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H29_ARATH2.565e-1745.69Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H50_ORYSJ6.319e-1650.00Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H33_ORYSJ2.747e-1137.50Zinc finger CCCH domain-containing protein 33 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-C04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650188 ID=EY650188; Name=EY650188; organism=Citrus sinensis; type=EST; length=945bp
CAAAAGTTTTTCTCTCAAAATTCAATTTCAATTTTCCCAAAAACATACCC
AAAATGTGTTCTTGGTGGATTTTGCTATAAATGATCGCACTCTCCTGATT
CTTGACACTTATTTTCTAAAAATATTTCTGAAATTCTAATCTTGATTGAC
TCCTTGTTTTGCTTTTTGACTAAGCAATCCGTACGCGTTGCTTGTCTGCA
AATTCTTGATTGTTCTTTCAAAACTATTTAATCATGTGTGGTGGATCAGA
GAAGTTGAGTTCTAAGGCTTTGGCTCCATCAGCCTCCCCACCAAGCAAGC
CTTCTCTACAAAGAAATATGAGTAATCCAACTGAAACTATGAAATCTGAT
CATTCTTTCTCTCGTTTACTTGAACTTGCTGCTGATAATGATGTTGAGGG
TTTTAAACAATGTATTTGTGACACATCTGCCATCTGTGAAGTTGGACTCT
GGTATTCTTTTCAACGCTTGTCGAAAAAGATAGTTCTTCAGCATAGGACT
CCGCTAATGGTTGCTGCTGAGTATGGAAGTGTAGATGTTGTTAAACTGAT
TCTGTCTTTGACCAAGGCTGATGTAAATCTCACTTGTGGCCTGGATAAAA
GCACTGCTCTACACTGNGCTGCTTCTGGTGGATCTGTGAATGCTGTCCAT
GTTGCAAAGTTGCTCTTATTTGCTGGTGCTGATTCTAATCCTACCTGTGC
CCATGGGATTCGCCATTTGATTGTATTGGTGTCCATTCAAAATGTTCTGA
TTCAAGGGGGTCCCCTTGAAGACCTTNGAAGGAATGGGGGTCAATTAGTT
TTGATGACTGCACGTTTCAGGGGTCGATTTGAGATCCTAGTCATCCCTTT
CATATCCTCCGAGAAACGTCCTTATCTCTCTTACTTCAGTCTGAGATGTG
CATGCTTTGGTGCCCCCCAAATTAATATACCCTATCGTCCTTTCT
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