EY650171

Overview
NameEY650171
Unique NameEY650171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2561 contig Csv1_Contig2561:78..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY650171 vs. ExPASy Swiss-Prot
Match: YKM6_SCHPO (UPF0613 protein PB24D3.06c OS=Schizosaccharomyces pombe GN=SPAPB24D3.06c PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 59/230 (25.65%), Postives = 104/230 (45.22%), Query Frame = 3 
Query:  237 VIFIGGLTDGFFATEYLEPLAIALDKERWSLVQFLMXXXXXXXXXXXLQQDAMEIDQLISYLINKDNSE----GVVLLGHSTGCQDIVHYMXXXXXXXXXXXXXIFQAPVSDRE--YRATLPE-TAAMID-LASSMIREGRGSELMPR------------EADPCSPITAQRYHSLCAYMGXXXXXXXXXXXXQLKQRLGHMANTPCQVIFSMADEYVPEYVDKKALGER 866
            ++F+GGL DG     Y++ L   LD+  WS+VQ              L++D  ++ + + Y ++   ++     +VL+GHSTG Q++++Y+             I QAPVSDRE  Y+    E T  ++D + +  + +G G++++PR             A+ C  +T  R +    +               LK+  G  A++   ++ S  DE+V    DK  L  R
Sbjct:   38 LLFVGGLGDGLLTVPYVQELVNPLDEIGWSIVQVQTQSSYIGWGTGSLKRDDEDLHKAVDYFLHIGGADFSTRKIVLMGHSTGSQNVLYYL-TQSILPNYLIAGIAQAPVSDREAAYQFNGKEKTKELVDWVKAEYLDKGLGNDVLPRSKVENFFGEVPTSANRCIDLTDVRGND-DFFSSDLSADDFAKTFGNLKEISGSTAHSQLILLMSERDEFVSPSTDKAQLLNR 265
The following BLAST results are available for this feature:
BLAST of EY650171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YKM6_SCHPO2.663e-1125.65UPF0613 protein PB24D3.06c OS=Schizosaccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-008-A09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650171 ID=EY650171; Name=EY650171; organism=Citrus sinensis; type=EST; length=928bp
TTTTAAAACCTNCGACCCACGCGTCCGCTACGCCTCCGTCAACTTCTTGT
TTCTATGGACCTAGAGGCCGCTTAAATAGGTCCGCAAGTTGTAAAGTGAC
GAGCAATTCAGCTTCCGGTGGCCAGGATATGGCCGACCCTGTTGTTATGG
GCAAGAACCAGTTTCGTGGTGTCCTCTTCAAGTACGGTCCCAAGCCTGTT
CAGGTCGCATTTAAAACTGGTGACTATCAACAACAAGTTATTTTTATTGG
CGGATTGACTGATGGTTTTTTTGCTACCGAATACTTGGAACCTCTTGCAA
TTGCTTTGGACAAAGAGAGATGGTCACTTGTTCAGTTTCTTATGACATCT
TCATATACTGGATATGGCACTTCCAGTTTGCAACAAGATGCAATGGAAAT
TGATCAGCTGATTAGCTATCTCATCAACAAAGACAATTCTGAAGGTGTAG
TGTTGCTGGGTCATAGTACTGGCTGCCAGGATATTGTGCATTATATGTGT
GCAAATGCAGCATGTTCGCGAGCTGTCCGTGCTGCCATTTTTCAGGCTCC
AGTTAGTGATAGAGAATACAGAGCAACTCTTCCTGAAACAGCTGCTATGA
TTGACCTGGCTTCAAGCATGATTAGAGAAGGGCGGGGATCAGAGCTAATG
CCTAGGGAAGCAGATCCATGTTCTCCAATAACTGCCCAGAGGTATCACTC
TCTTTGCGCCTACATGGGGGATGACGACATGTTCAGTTCGGACCTTAGTG
ATGACCAGCTGAAACAGAGACTGGGTCACATGGCTAATACTCCTTGCCAG
GTTATCTTTTCCATGGCTGACGAATATGTGCCAGAGTATGTTGACAAGAA
AGCATTGGGTGAAAGATGTGCANAGCTTGGGTGGTGCANAGAAAGTTGAA
TTGACATGGGATCACTCGCTTTCTATAG
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