EY650159

Overview
NameEY650159
Unique NameEY650159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650159_ssr406 microsatellite EY650159_ssr406:406..417. BLAST: Citrus ESTs to Prunus persica proteins V1
EY650159_ssr446 microsatellite EY650159_ssr446:446..463. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY650159 vs. ExPASy Swiss-Prot
Match: TAF12_SCHPO (Transcription initiation factor TFIID subunit 12 OS=Schizosaccharomyces pombe GN=taf12 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.057e-17
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 2 
Query:  587 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKYQLWSPRYITA-LGENWHLTVPDF 814
            N+LL KRK+ DL+ Q+DS+ K++PEVE+LLLEIAD+F++SVT+FAC LAKHRK      R +   L  NW++ +P F
Sbjct:  340 NRLLSKRKLHDLLQQIDSEEKIEPEVEELLLEIADEFVESVTNFACRLAKHRKSDTLDVRDVQLHLERNWNIRLPGF 416
[Close]
BLAST of EY650159 vs. ExPASy Swiss-Prot
Match: TAF12_XENLA (Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis GN=taf12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 2 
Query:  587 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKYQLWSPRYITA-LGENWHLTVPDF 814
            NQ+L K+K+ DLV +VD   ++D +VE++LL+IADDFI+SV S AC LA+HRK      + +   L   W++ +P F
Sbjct:   58 NQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQIADDFIESVVSAACQLARHRKSNTLEVKDVQLHLERQWNMWIPGF 134
[Close]
BLAST of EY650159 vs. ExPASy Swiss-Prot
Match: TAF12_MOUSE (Transcription initiation factor TFIID subunit 12 OS=Mus musculus GN=Taf12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 2 
Query:  587 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKYQLWSPRYITA-LGENWHLTVPDF 814
            NQ+L K+K+QDLV +VD   ++D +VE++LL+IADDFI+SV + AC LA+HRK      + +   L   W++ +P F
Sbjct:   55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGF 131
[Close]
BLAST of EY650159 vs. ExPASy Swiss-Prot
Match: TAF12_HUMAN (Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 2 
Query:  587 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKYQLWSPRYITA-LGENWHLTVPDF 814
            NQ+L K+K+QDLV +VD   ++D +VE++LL+IADDFI+SV + AC LA+HRK      + +   L   W++ +P F
Sbjct:   55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGF 131
[Close]
BLAST of EY650159 vs. ExPASy Swiss-Prot
Match: TAF12_BOVIN (Transcription initiation factor TFIID subunit 12 OS=Bos taurus GN=TAF12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.961e-12
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 2 
Query:  587 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKYQLWSPRYITA-LGENWHLTVPDF 814
            NQ+L K+K+QDLV +VD   ++D +VE++LL+IADDFI+SV + AC LA+HRK      + +   L   W++ +P F
Sbjct:   55 NQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGF 131
The following BLAST results are available for this feature:
BLAST of EY650159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TAF12_SCHPO3.057e-1754.55Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_XENLA2.961e-1245.45Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_MOUSE2.961e-1245.45Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_HUMAN2.961e-1245.45Transcription initiation factor TFIID subunit 12 O... [more]
TAF12_BOVIN2.961e-1245.45Transcription initiation factor TFIID subunit 12 O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-H08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650159 ID=EY650159; Name=EY650159; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGGGCAACAATTGTCACAACAGAATCCCCTGGCCTCTCCTC
AGATCCAAAACTTATCTAGGACATCATCATCTCTGGCATTTATGAATCCT
CAGTTATCTGGGCTGGCTCAGAACGGACAGCCAGGCATGATGCAAAATTC
TCTGTCACAACAGCAGTGGTTGAAGCAAATGCCTGCAATGTCTGCTCCTG
GCTCTCCTTCATTCCGTCTCCAACAACATCAGAGGCAATCCCCGGTCCTC
TTACAGCAGCAACTTGCTTCATCTCCTCAATTACAGAACTCTATGGGCTT
GAATCAACAGCAGTTGTCCCAGCTGGTGCAGCAGCAGCCACAAATGGGGC
ATGCACAGCTGCATCAGCCACAGCCGCAGCCGCAGCCGCAGCAGCAACAG
CAACTACAACAACAACAATCGCAACAGCAACCAAGCTTGCATCAACAGCA
GCAGCAGCAGCAGTCTCCAAGGATTTCAGGCCCCGCAGGCCAGAAATCTC
TTAGTTTGACAGGATCACAGCCAGATGCAACTGTCTCTGGTACAACTACA
CCTGGGGGCAGTTCAAGTCAAGGAACAGAAGCAACTAATCAACTCCTTGG
GAAGAGAAAGATACAGGATCTAGTTTCCCAGGTGGACTCCCAGGGAAAGG
TGGATCCAGAAGTTGAAGATCTTCTTTTGGAAATTGCTGATGACTTCATT
GACTCTGTGACTTCCTTTGCCTGTAATTTGGCAAAGCATCGAAAATATCA
ACTTTGGAGTCCAAGATATATTACTGCACTTGGAGAAAACTGGCATTTGA
CGGTTCCAGATTTTCAAGTGAGAGCGGATCACCAAGGAATCTTATCTANT
GACGTCCAGTNAGCGTCTTGAATGAACCTGCATTGA
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