EY650156

Overview
NameEY650156
Unique NameEY650156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY650156_ssr7 microsatellite EY650156_ssr7:7..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY650156 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.239e-36
Identity = 89/192 (46.35%), Postives = 117/192 (60.94%), Query Frame = 2
Query:  194 MVAFHSSVIKWYFLHK--PIXXXXXXXXXXXXXXXNGIVHAGSD-DKSVLIQFKNSVSDPSGLLSSWNLKDSSDHCTWPGVSCDSNSRVVSLNISGSGKEGKFTETGNRFQFSCSDYDQFPIYGFGIRRNCNGVNGKLSGELLPVIANLTELRNLSLXFNGFHGEIPNENLSMGTLXAL*LXXNLXNGDLPD 760
            M +  SSVIKW F  +  P                 G +   +D DKSVL++FK +VSDP  +L+SW +++S D+C+W GVSCDS+SRV++LNISGSG     +   +R +F+C D  +FP+YGFG+RR+C G +G L+G L  VI +LT LR LSL FN F GEIP     M  L  L L  NL  G LPD
Sbjct:    1 MTSLPSSVIKWRFFRRQMPSDVVFSLCLLCFASCLAGKITVLADSDKSVLLRFKKTVSDPGSILASW-VEESEDYCSWFGVSCDSSSRVMALNISGSG-----SSEISRNRFTCGDIGKFPLYGFGVRRDCTGNHGALAGNLPSVIMSLTGLRVLSLPFNSFSGEIPVGIWGMEKLEVLDLEGNLMTGSLPD 186          
BLAST of EY650156 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.000e-18
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  311 GSDDKSVLIQFKNSVSDPSGLLSSWNLKDSSDHCTWPGVSCDSNSRVVSLNISGSGKEGKFTETGNRFQFSCSDYDQFPIYGFGIRRNCNGVNGKLSGELLPVIANLTELRNLSLXFNGFHGEIPNENLSMGTLXAL*LXXN 736
            G  D++ L++ K+S  DP+G+LSSW    SS+HC+W GVSC+S+SRVVSL + G                 C + +   +       +C+    +L G + PV+ +L+E+R LSL FN   GEIP E   +  L  L L  N
Sbjct:   29 GLHDEAALLKLKSSFLDPNGVLSSWVSDSSSNHCSWYGVSCNSDSRVVSLILRG-----------------CDELEGSGVLHLPDLSSCSSSKRRLGGVISPVVGDLSEIRVLSLSFNDLRGEIPKEIWGLEKLEILDLKGN 153          
BLAST of EY650156 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.023e-12
Identity = 51/150 (34.00%), Postives = 67/150 (44.67%), Query Frame = 2
Query:  332 LIQFKNSVS-DPSGLLSSWNLKDSSDHCTWPGVSCDSNSRVVSLNISGSGKEGKFTET-GNRFQFSCSDYDQFPIYGFGIRRNCNGVNGKLSGELLPVIANLTELRNLSLXFNGFHGEIPNENLSMGTLXAL*LXXNLXNGDLP-DXCST 772
            L  FKN +S DP G+LS W +  S  HC W G++CDS   VVS+++     EG  +    N       D               N   GK+  E    I  LTEL  L L  N F G IP+    +  +  L L  NL +GD+P + C T
Sbjct:   34 LKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDL------------TSNSFTGKIPAE----IGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKT 167          
The following BLAST results are available for this feature:
BLAST of EY650156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RPK2_ARATH2.239e-3646.35LRR receptor-like serine/threonine-protein kinase ... [more]
RPK1_ARATH8.000e-1836.62Probable LRR receptor-like serine/threonine-protei... [more]
FLS2_ARATH5.023e-1234.00LRR receptor-like serine/threonine-protein kinase ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-007-H05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY650156 ID=EY650156; Name=EY650156; organism=Citrus sinensis; type=EST; length=884bp
AATCTCCTCTCTCTCTCTCTCTCTCTCTTCCCCCCCCCCCCCCCAATTTC
TTTGTTTTCGTCTAACCAGAACCAAAAATTAGGGTTAGGGTTTGAGTTTT
CAAGGAAATAAAAACCCTCTCTCTTTTATCTTCTCCTACAAAGAGAAAGG
GGGTTTAGGGTTTGTAAAGAACCCTCAAGAGGGTAATCAAAAAATGGTTG
CTTTTCACTCTTCCGTGATCAAATGGTACTTTTTGCACAAACCCATCTCC
TCAGTTTCACTGTTTCTGCTTTTAGTGGTCAGCTTTAGTTTAAACGGCAT
CGTTCATGCCGGCTCGGATGATAAATCTGTGCTGATACAGTTCAAGAACT
CGGTTTCAGACCCGTCTGGCTTGCTTTCGAGCTGGAATCTGAAAGATAGC
TCCGATCACTGCACTTGGCCTGGTGTGTCTTGCGACTCTAATTCGCGTGT
GGTTTCACTTAACATTTCTGGCAGTGGCAAAGAAGGTAAATTTACTGAAA
CTGGAAATCGGTTTCAATTTTCTTGTTCTGATTATGATCAGTTTCCAATT
TATGGATTTGGTATTCGAAGGAATTGTAACGGTGTTAATGGAAAGCTGAG
TGGTGAACTGTTGCCCGTGATTGCTAATCTTACCGAACTTAGAAATTTAT
CTCTTNCATTTAATGGGTTTCATGGTGAGATTCCTAATGAAAATCTGAGT
ATGGGAACCTTGNANGCTCTTTGATTANAGGNAAATCTGNTGAATGGGGA
TCTGCCTGATNNCTGTTCCACTTAAAAAAGTCTCGGGNTCTTATTTANGG
GTTAATANGATNACCGTGAGATACCGNCCTNCTCTCAAATTTGTGAATTA
AAAAAGTNAAATTGGCTGGTATCTGTGAATGGAC
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